DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment run and runx3

DIOPT Version :9

Sequence 1:NP_001285501.1 Gene:run / 33059 FlyBaseID:FBgn0003300 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_001349273.1 Gene:runx3 / 58127 ZFINID:ZDB-GENE-000605-2 Length:438 Species:Danio rerio


Alignment Length:534 Identity:155/534 - (29%)
Similarity:217/534 - (40%) Gaps:160/534 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 SSNATTASAIAINPAQSLANTSTHSASSTGSSTPDLSTNNTSSSSNATTSPQNSAKMPSSMTDMF 104
            :||:...:..:.:|  ||....:.|...|..|........|.|.|.:...|..|.:...|     
Zfish     2 ASNSIFDTFSSYSP--SLLRDPSTSRRFTPPSASFPCAKVTESQSMSAPGPLRSGRPVES----- 59

  Fly   105 ASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIALDDVPDGTLVSIKCGNDENY 169
            .|:.::|.::.|||.:|.||:.|||.||:|||.||:||.||||:||.||||||||::..||||||
Zfish    60 RSVVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTLVTVMAGNDENY 124

  Fly   170 CGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIATYPVQIASYSKAIKVTVDGPREPRS 234
            ..||||.:..||||||:|||||||||||||||||||||:.|.|.|:|:|.:|||||||||||||.
Zfish   125 SAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTGPPQVATYHRAIKVTVDGPREPRR 189

  Fly   235 KQSYGYPHPGAFNPFMLNPAWLDAAYMTYG--YADYFRHQAAA----------QAAQVHHPALAK 287
            .:              :.|   |..:..:.  .:|..|.|.|:          :..|.|:     
Zfish   190 HR--------------VKP---DDPHKQFSDRLSDIERFQRASLRMNPGNGTTRPHQTHY----- 232

  Fly   288 SSASSVSPNPNPSVATSSSSAVQPSEYPHPAAAVAAAAG----------QPAAMMPSPPGAAPAT 342
                      :|| :|:....:.|.:...|.........          |.....||      .:
Zfish   233 ----------SPS-STTQIPGLWPDQIDPPTLKTCKVEDDLRWTSTDLFQQRTSFPS------LS 280

  Fly   343 PYAIPQFPFNH-----------------VAAAAAAKAATPHAFHPYNFAAAAGLRARNAALHHQS 390
            |...|:|..:|                 :...:.|...|...:|.|......|.:.:|:.....|
Zfish   281 PLTAPRFSDSHMHYPSHFTYSANPSSTGIGGLSVAGMPTSSRYHTYLPPPYPGNQNQNSHFQTNS 345

  Fly   391 EPVHV---------------SPASSRPSSSSPTQQHVLLKL---------NTSIETSSIHEQSAS 431
            .|.|:               :..|......|||:.......         |.::..:::..|  |
Zfish   346 SPYHLYYGTGSGSYQFSMIPTGGSGSGGDRSPTRMLTSCTAAGGAAGNTGNNNLINANLGNQ--S 408

  Fly   432 DGDSDDEQIDVVKSEFDLDKSLDVAPLRMRCDLKAPSAMKPLYHESGPGAVANSRQPSPETTTKI 496
            ||             .|.|.|                      |.:.|.|::.|        |:|
Zfish   409 DG-------------VDADGS----------------------HSNSPTAMSAS--------TRI 430

  Fly   497 KSAAVQQKTVWRPY 510
                  .::|||||
Zfish   431 ------DESVWRPY 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
runNP_001285501.1 Runt 114..235 CDD:279225 87/120 (73%)
runx3NP_001349273.1 Runt 69..190 CDD:307137 87/120 (73%)
RunxI 334..438 CDD:312115 25/154 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170575056
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11950
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.030

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