DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment run and runx1

DIOPT Version :9

Sequence 1:NP_001285501.1 Gene:run / 33059 FlyBaseID:FBgn0003300 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_571678.1 Gene:runx1 / 58126 ZFINID:ZDB-GENE-000605-1 Length:451 Species:Danio rerio


Alignment Length:455 Identity:153/455 - (33%)
Similarity:197/455 - (43%) Gaps:116/455 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 PAQSLANTSTHSASSTGSSTPDLSTNNTSSSSNATTSPQNSAKMPSSMTDMFASLHEMLQEYHGE 117
            ||.....|...:..|:|..:..|......|:..|.......|.         .|:.|:|.::.||
Zfish    11 PAPGRRFTPPSTTLSSGKMSEGLPLGAQESTGAALVGKLRMAD---------RSMVEVLSDHPGE 66

  Fly   118 LAQTGSPSILCSALPNHWRSNKSLPGAFKVIALDDVPDGTLVSIKCGNDENYCGELRNCTTTMKN 182
            |.:|.||:.|||.||.|||.||:||.||||:||.|:||||||::..||||||..||||.|..:||
Zfish    67 LVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDIPDGTLVTVMAGNDENYSAELRNATAAIKN 131

  Fly   183 QVAKFNDLRFVGRSGRGKSFTLTITIATYPVQIASYSKAIKVTVDGPREPRSKQSYG-------- 239
            |||:|||||||||||||||||||||:.|.|.|:|:|.:|||:|||||||||..:...        
Zfish   132 QVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYQRAIKITVDGPREPRRHRQKPDEAVKPGA 196

  Fly   240 --------------YPHPGA---FNPFMLNPAWLDAAYM------------TYGYADYFRHQAAA 275
                          .||.|.   ..|.:..|.:...|:.            ::.|...:.:....
Zfish   197 LAFSEQLRRSAMRCSPHHGPAPNTRPTLNTPPFGSPAHSQIPDSRQMQTSPSWSYEQSYPYLGPI 261

  Fly   276 QAAQVHHPALAKSSASSVSPN------------PNPSVATSSSSAVQPS---------EYPHPAA 319
            ....||       ..:.:|||            .:|.|....|....||         ..|:|..
Zfish   262 STPAVH-------PTTPISPNRTALHCPELTAFTDPRVGLERSFPSLPSLPDGRFSDPRVPYPTG 319

  Fly   320 A-------VAAAAGQPAAMMPSPPGAAPATPYAIPQFPFNHVAAAAAAKAATPHAFH-------- 369
            |       |.:|.|...:.|.||.|....  |..|.:|.....|.|.|..|:...:|        
Zfish   320 AFTYTPTPVTSAIGIGMSAMSSPAGRYHT--YLPPAYPAGSSQAQAGAFQASSSPYHLYYSSAAG 382

  Fly   370 PYNFA------AAAGLRA------------RNAALH----HQSEPVHVSPASSRPSSSSPTQQHV 412
            .|.|:      ||||.|:            .:|.||    :|||.|..:..|   .|||||...|
Zfish   383 SYQFSMMPSGGAAAGERSPPRILPCTNASTGSALLHPSLPNQSEGVVEAEGS---HSSSPTSMSV 444

  Fly   413  412
            Zfish   445  444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
runNP_001285501.1 Runt 114..235 CDD:279225 85/120 (71%)
runx1NP_571678.1 Runt 63..184 CDD:307137 85/120 (71%)
Atrophin-1 <160..426 CDD:331285 62/274 (23%)
RunxI 359..451 CDD:312115 26/89 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3982
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 191 1.000 Inparanoid score I3856
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11950
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.050

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