DRSC/TRiP Functional Genomics Resources

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Protein Alignment run and Runx2

DIOPT Version :10

Sequence 1:NP_523424.2 Gene:run / 33059 FlyBaseID:FBgn0003300 Length:510 Species:Drosophila melanogaster
Sequence 2:XP_038939882.1 Gene:Runx2 / 367218 RGDID:2282 Length:652 Species:Rattus norvegicus


Alignment Length:507 Identity:159/507 - (31%)
Similarity:205/507 - (40%) Gaps:173/507 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 QVLAAAAAAAAAAAAAVAQGPGPQ-QSSNATTASAIAINPAQSLANTSTHSASSTGSSTPDLSTN 78
            |..|||||||||||||.|..|..: ...|.|....||.:||                        
  Rat   183 QEAAAAAAAAAAAAAAAAAVPRLRPPHDNRTMVEIIADHPA------------------------ 223

  Fly    79 NTSSSSNATTSPQNSAKMPSSMTDMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPG 143
                                                  ||.:|.||:.|||.||:|||.||:||.
  Rat   224 --------------------------------------ELVRTDSPNFLCSVLPSHWRCNKTLPV 250

  Fly   144 AFKVIALDDVPDGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITI 208
            ||||:||.:|||||:|::..||||||..||||.:..||||||:|||||||||||||||||||||:
  Rat   251 AFKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITV 315

  Fly   209 ATYPVQIASYSKAIKVTVDGPREPR--------SKQSY---------GYPH-------------- 242
            .|.|.|:|:|.:|||||||||||||        ||.|.         ..||              
  Rat   316 FTNPPQVATYHRAIKVTVDGPREPRRHRQKLDDSKPSLFSDRLSDLGRIPHPSMRVGVPPQNPRP 380

  Fly   243 -----PGAFNP-----------FMLNPAW-LDAAYMTY------------------------GYA 266
                 |..|||           ...:|.| .|.:|.:|                        ...
  Rat   381 SLNSAPSPFNPQGQSQITDPRQTQSSPPWSYDQSYPSYLSQMTSPSIHSTTPLSSTRGTGLPAIT 445

  Fly   267 DYFRHQAAAQAAQVHHPALAKSSASSVSPNPNPSVATSSSSAVQPSEY------------PHPAA 319
            |..|..:.::.:.:...:......||..|.|:.:...|.||:.:|..:            |.|.|
  Rat   446 DVPRRISDSEPSTLDSQSSTTLFLSSEEPGPSTAALPSPSSSCEPQPFSPSPTMLPSLLQPLPIA 510

  Fly   320 AVAAAAGQPA-----AMMPSPPGAAPATPYAIPQFPFNHVAAAAAAKAATPHAFHPYNFAAAAGL 379
            :.|.|...|.     .::.|.|.|||.....:|..|     :|.:..........|....|.|..
  Rat   511 STAPAPCVPRRTGLYTIVTSSPEAAPHLVDWLPSCP-----SATSPGVRGKDRERPQTMLAPAPA 570

  Fly   380 RARNAALHHQ---------SEPVHVSPASSRPSSSSPTQQ----HVLLKLNT 418
            ..|.   |:|         :|....||....|.:::||.:    .:|::|.|
  Rat   571 LERG---HNQHPGPARDGHAEHAGTSPPPCSPPATAPTLEANVGDILVELRT 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
runNP_523424.2 Runt 107..235 CDD:459963 84/135 (62%)
Runx2XP_038939882.1 Runt 214..342 CDD:459963 88/189 (47%)
PHA03247 <319..606 CDD:223021 66/294 (22%)

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