DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment run and RunxB

DIOPT Version :9

Sequence 1:NP_001285501.1 Gene:run / 33059 FlyBaseID:FBgn0003300 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_001259745.1 Gene:RunxB / 33051 FlyBaseID:FBgn0259162 Length:663 Species:Drosophila melanogaster


Alignment Length:678 Identity:194/678 - (28%)
Similarity:279/678 - (41%) Gaps:253/678 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 QQSSNATTASAIAINPAQSLANTSTHSASSTGSSTPDLSTNNTSSSSNATTSPQNSAK------- 95
            ||...|||.:....|     |.:|..|.::..::|...:.|||::::|:||:..|:..       
  Fly    34 QQQQTATTTTTKRRN-----AESSASSNNNNNNNTSTTNNNNTNNNNNSTTNNNNNNNNNNVKTK 93

  Fly    96 --------MPSSMTDMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIALDD 152
                    .|.::.:  .::..:|.|:.|||.:||||.::|:.||.||||||:||.||||:||.:
  Fly    94 PVDTSPYLTPENLIE--RTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALGE 156

  Fly   153 VPDGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIATYPVQIAS 217
            |.|||:|:|:.|||||:||||||||..|||||||||||||||||||||||||||.|:|.|:|||:
  Fly   157 VMDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIVISTNPIQIAT 221

  Fly   218 YSKAIKVTVDGPREPRSKQSYGYPHPGAFNPFMLNPAWLDA------------------------ 258
            |:||||||||||||||||..:...||.||.|....|..|.|                        
  Fly   222 YTKAIKVTVDGPREPRSKVRHQGFHPFAFGPQRFGPDPLMAGLPFKLPGFAHHLVGMHSHLHAPD 286

  Fly   259 --AYMTYG-------YADYFRHQAAA------------------QAAQVHHPALAKSSASSVSPN 296
              |:|..|       .|.:|.|.|||                  |..|.|..|...::.|:.||.
  Fly   287 WRAHMALGGRPAAFTAAPFFGHHAAAFPTASGLRGLSGDSQQHQQQQQQHQLATVGAAHSTTSPE 351

  Fly   297 PNPSVATSS----SSAVQP--SEYPHPAAAV--------------------------AAAAGQPA 329
            .:|:..|:|    |:.|||  :..|.|..::                          .:..|.|.
  Fly   352 GSPTTTTTSGTQLSAFVQPPMTSSPPPVTSLQHDNNNNNSNNNNSSSHIDAGFESDSISVTGSPR 416

  Fly   330 AMMPSP----------------------------------------------PGAAPATPYAI-- 346
            ..:.||                                              ||:..|....|  
  Fly   417 KSLGSPLTHDEEEAEAEAEAEAEAEAEAEEAEVGGLSRNGGGIQGPLHSESSPGSGGAFTALIQR 481

  Fly   347 ----PQFPFNHVAAAAAAK-AATPHAFHPYNFAAAAGLRARNAALHHQSEPVHV----------- 395
                |...|...|||.... |.:.|:|:|   |.||.|..::..|...|:.::.           
  Fly   482 SGKNPTELFGGFAAAGGNHFAPSGHSFNP---ALAAQLFLQSPLLPQSSQWLYTQLYGSYSDLPW 543

  Fly   396 --SPASSRPSSSSPTQQHVLLKLNTSIETSSIHEQSASDGDSDDEQIDVVKSEFDLDKSLDVAPL 458
              :.|::..::.:|.|:      |:.|....        .:.|.:.::::|              
  Fly   544 LRNAAAAAAANINPGQE------NSGIPPLG--------SNPDHDGVNLIK-------------- 580

  Fly   459 RMRC-----------DLKAPSAMKPLYHESGPGAVANSRQPSP-------ETTTKIKSAA----- 500
              ||           :...|:|..|:        .:..|.|||       :.:|..:||:     
  Fly   581 --RCVTLITHNPPDAENANPNASPPV--------SSTRRSPSPVETIDLDDVSTTSRSASGSSGH 635

  Fly   501 ------------VQQKT------VWRPY 510
                        ::.:|      |||||
  Fly   636 GGGVGGGGAVGPIRTRTPKPSADVWRPY 663

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
runNP_001285501.1 Runt 114..235 CDD:279225 91/120 (76%)
RunxBNP_001259745.1 Runt 118..239 CDD:279225 91/120 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 132 1.000 Domainoid score I3175
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I3847
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D109070at6656
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 1 1.000 - - otm14562
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11950
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
88.070

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