DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment run and runx3

DIOPT Version :9

Sequence 1:NP_001285501.1 Gene:run / 33059 FlyBaseID:FBgn0003300 Length:510 Species:Drosophila melanogaster
Sequence 2:XP_002936643.1 Gene:runx3 / 100485729 XenbaseID:XB-GENE-487784 Length:396 Species:Xenopus tropicalis


Alignment Length:491 Identity:153/491 - (31%)
Similarity:216/491 - (43%) Gaps:126/491 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 IAINPAQSLANTSTHSASSTGSSTPDLSTNNTSSSSNATTSPQNSAKMPSSMTDMFASLHEMLQE 113
            |.::|:.|...|...::...|.    :..||.:.:|:.          |........::.::|.:
 Frog     3 IPVDPSTSRRFTPPSTSFPCGK----MGENNGAINSSG----------PGRTRAEIRTVVDVLAD 53

  Fly   114 YHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIALDDVPDGTLVSIKCGNDENYCGELRNCTT 178
            :.|||.:|.||:.|||.||:|||.||:||.||||:||.||||||:|::..||||||..||||.:.
 Frog    54 HAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDENYSAELRNASA 118

  Fly   179 TMKNQVAKFNDLRFVGRSGRGKSFTLTITIATYPVQIASYSKAIKVTVDGPREPR------SKQS 237
            .||||||:|||||||||||||||||||||:.|.|.|:|:|.:|||||||||||||      .:||
 Frog   119 VMKNQVARFNDLRFVGRSGRGKSFTLTITVFTSPTQVATYHRAIKVTVDGPREPRRHRQKLEEQS 183

  Fly   238 YGYPHPGAFNPFMLNPAWLDAAYMTYGYADYFRHQAAAQAAQVHHPALAKSSASSVSPNPNPSVA 302
                     .||                :|.|     :...|...          |.||.||...
 Frog   184 ---------KPF----------------SDRF-----SDLRQTFR----------VQPNSNPRAT 208

  Fly   303 TSSSSAVQPSEYPHPAAAVAAAAGQPAAMMPSPPGAAPATPYAIP-QF--PFNHVAAAAAAKAAT 364
            .:::         :|.::.|....|         |.....|:..| ||  ||:.:.:...::.:.
 Frog   209 LTNT---------NPFSSQAQTQIQ---------GPTDLNPFTDPRQFERPFSALPSLTESRFSD 255

  Fly   365 PHAFHPYNFAAAAGLRA----------------RNAALHHQSEPVHVSPASSRPSSSSPTQQHVL 413
            |...:|...::|....|                .....||...|... |.||: :.|.|.|.:  
 Frog   256 PRMHYPSAMSSAFSYTASPSTTGIGGISMTGMPTTTRFHHTYLPPPY-PGSSQ-NQSGPFQTN-- 316

  Fly   414 LKLNTSIETSSIHEQSASDGDSDDEQIDVVKSEFDLDKSLDVAPLRM--RC-DLKAPSAMKPLYH 475
                    .|..|....:  .|...|..:|..|        .:|.||  .| .:...:.:.|...
 Frog   317 --------ASPYHLYYGT--SSGSYQFSMVAGE--------RSPSRMLSSCTSVAGNNLINPNLA 363

  Fly   476 ESGPGAVAN-SRQPSPETTTKIKSAAVQQKTVWRPY 510
            ....|..|: |...||   |.:.::....::|||||
 Frog   364 NQSDGVDADGSHSNSP---TAMTTSGRMDESVWRPY 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
runNP_001285501.1 Runt 114..235 CDD:279225 86/126 (68%)
runx3XP_002936643.1 Runt 54..175 CDD:366336 86/120 (72%)
RunxI 306..396 CDD:369907 24/113 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I3847
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11950
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.150

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