DRSC/TRiP Functional Genomics Resources

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Protein Alignment RunxB and runx3

DIOPT Version :9

Sequence 1:NP_001259745.1 Gene:RunxB / 33051 FlyBaseID:FBgn0259162 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001349273.1 Gene:runx3 / 58127 ZFINID:ZDB-GENE-000605-2 Length:438 Species:Danio rerio


Alignment Length:501 Identity:169/501 - (33%)
Similarity:219/501 - (43%) Gaps:161/501 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 KPVDTSPYLTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALGEV 157
            :||::           |:|..:||:|.||||:|.||:.:|:.||:|||.|||||:||||:|||:|
Zfish    55 RPVES-----------RSVVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDV 108

  Fly   158 MDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIVISTNPIQIATY 222
            .|||:||:.||||||:..||||.:||||||||:||||||||||||||||||||.:.|.|.|:|||
Zfish   109 PDGTLVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTGPPQVATY 173

  Fly   223 TKAIKVTVDGPREPRSKVRHQGFHPFAFGPQRFGPDPLMAGLPFKLPGFAHHLVGMHSHLHAPDW 287
            .:|||||||||||||   ||           |..||.     |.|  .|:..|..:.....|   
Zfish   174 HRAIKVTVDGPREPR---RH-----------RVKPDD-----PHK--QFSDRLSDIERFQRA--- 214

  Fly   288 RAHMALGGRPAAFTAAPFFGHHAAAFPT--------------------ASGLRGLSGDSQQHQQQ 332
                :|...|...|..|...|::.:..|                    ...||..|.|  ..||:
Zfish   215 ----SLRMNPGNGTTRPHQTHYSPSSTTQIPGLWPDQIDPPTLKTCKVEDDLRWTSTD--LFQQR 273

  Fly   333 QQQHQLATVGA-----------AHSTTSPEGSPTTTTTSGTQLSAFVQPPMTSS------PPPVT 380
            .....|:.:.|           :|.|.|  .:|::|...|  ||....|  |||      |||..
Zfish   274 TSFPSLSPLTAPRFSDSHMHYPSHFTYS--ANPSSTGIGG--LSVAGMP--TSSRYHTYLPPPYP 332

  Fly   381 SLQHDNNNNNSNNNNSSSHIDAGFESDSISVTGSPRKSLGSPLTHDEEEAEAEAEAEAEAEAEAE 445
            ..|  |.|::...|:|..|:..|        |||                               
Zfish   333 GNQ--NQNSHFQTNSSPYHLYYG--------TGS------------------------------- 356

  Fly   446 EAEVGGLSRNGGGIQGPLHSESSPGSGGAFTALIQRSGKNPTELFGGFAAAGGNHFAPSGHSFNP 510
                       |..|..:......||||         .::||.:.....||||   |......|.
Zfish   357 -----------GSYQFSMIPTGGSGSGG---------DRSPTRMLTSCTAAGG---AAGNTGNNN 398

  Fly   511 ALAAQLFLQSPLLPQSSQWLYTQLYGSYSDLPWLRNAAAAAAANIN 556
            .:.|.|..||..:...         ||:|:.|    .|.:|:..|:
Zfish   399 LINANLGNQSDGVDAD---------GSHSNSP----TAMSASTRID 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RunxBNP_001259745.1 Runt 118..239 CDD:279225 89/120 (74%)
runx3NP_001349273.1 Runt 69..190 CDD:307137 89/123 (72%)
RunxI 334..438 CDD:312115 35/175 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 211 1.000 Domainoid score I2735
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 221 1.000 Inparanoid score I3524
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 1 1.000 - - mtm6398
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11950
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
88.060

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