DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RunxB and runx2a

DIOPT Version :9

Sequence 1:NP_001259745.1 Gene:RunxB / 33051 FlyBaseID:FBgn0259162 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_998023.1 Gene:runx2a / 405784 ZFINID:ZDB-GENE-040629-3 Length:467 Species:Danio rerio


Alignment Length:394 Identity:142/394 - (36%)
Similarity:197/394 - (50%) Gaps:65/394 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 NNVKTKPVDTSPYLTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVL 152
            ::.:.:|....|.|.|.:  .||:..::|:||.|||:|.||:.:|:.||:|||.|||||:||||:
Zfish    42 SDAQPEPNAVVPRLRPHD--NRTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVV 104

  Fly   153 ALGEVMDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIVISTNPI 217
            |||:|.|||:||:.||||||:..||||.:||||||||:||||||||||||||||||||.:.|||.
Zfish   105 ALGDVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPP 169

  Fly   218 QIATYTKAIKVTVDGPREPRSKVRHQGF-----HPFAFGP-----------------QRFGPDPL 260
            |:|||.:|||||||||||||   ||:..     .|..|..                 |...|.|.
Zfish   170 QVATYHRAIKVTVDGPREPR---RHRQKLEDPPKPPLFSERLSELERLRQTTMRVAVQTQSPRPS 231

  Fly   261 MAGLPFKL-PGFAHHLVGMHSHLHAPDWR------AHMALGGRPAAFTAAPFFGHHAAAFPTASG 318
            :...|... |.....:........:|.|.      .:::....|:..:..|.....|...||.|.
Zfish   232 LNATPNSFNPQGQTQISDPRQAQSSPPWSYEQPYPPYLSQMTSPSIHSTTPLSSTRATGLPTISD 296

  Fly   319 L-RGLSGDSQ----QHQQQQQQHQLATVGAAHSTTSPEGS---PTTTTTSGTQLSAFVQPPMTSS 375
            : |.|||.|:    ....:|.:.|..::.:...:..|...   |.|.|.:.|.:::.:...|:::
Zfish   297 VPRRLSGTSELSPFSADPRQFERQFPSLSSLTDSRFPSPRMHYPATFTYTPTPVTSGMSLGMSTT 361

  Fly   376 -------PPPVTSLQHDNNNNNSNNNNSSSHIDAGFESDSIS---VTGSPRK-----------SL 419
                   |||...  ...|.:.....:|:.::..|..|.|..   |.|..|.           |.
Zfish   362 THYHTYLPPPYPG--STQNQSGPFQTSSTPYLYYGASSGSYQFPMVPGGDRSPSRMLPPCTSAST 424

  Fly   420 GSPL 423
            ||.|
Zfish   425 GSTL 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RunxBNP_001259745.1 Runt 118..239 CDD:279225 90/120 (75%)
runx2aNP_998023.1 Runt 70..191 CDD:279225 90/123 (73%)
RunxI 376..467 CDD:285676 12/53 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 211 1.000 Domainoid score I2735
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 1 1.000 - - mtm6398
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11950
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
66.010

Return to query results.
Submit another query.