DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RunxB and lz

DIOPT Version :9

Sequence 1:NP_001259745.1 Gene:RunxB / 33051 FlyBaseID:FBgn0259162 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_511099.2 Gene:lz / 31883 FlyBaseID:FBgn0002576 Length:826 Species:Drosophila melanogaster


Alignment Length:707 Identity:208/707 - (29%)
Similarity:288/707 - (40%) Gaps:174/707 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 TATTTTTKRRNAESSASSNNNNNNNTSTTNNNNTNNNNNSTTNNNNNNNNNNVKTKPVDTSPYLT 102
            :|:..::......|:.::::.::.:|...:::..:||||:..:|:|:||||.|.           
  Fly   213 SASVGSSSPTGGASNGTAHSGHSGHTGGHSSSTASNNNNNGASNSNSNNNNAVH----------- 266

  Fly   103 PENLI--ERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALGEVMDGTIVTI 165
             ::|:  ||.|.....|||||||:|.:|:.:|:.||.|||||||||:||||:||.||.|||.|||
  Fly   267 -QDLLWMERLVQKRQQEHPGELVRTSNPYFLCSALPAHWRSNKTLPMAFKVVALAEVGDGTYVTI 330

  Fly   166 RAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIVISTNPIQIATYTKAIKVTV 230
            |||||||.|.||||.|..|||.|||||||||||||||||||||||.::|:|.|:|||.|||||||
  Fly   331 RAGNDENCCAELRNFTTQMKNDVAKFNDLRFVGRSGRGKSFTLTITVATSPPQVATYAKAIKVTV 395

  Fly   231 DGPREPRSKVRHQGF-HPFAFGPQRFGPDPLMAGLPFKLPGFAHHLVGMHSHLHAPDWRAHMALG 294
            |||||||||....|. |..|.|   .|..|.:.|.|....  .|.|..:....     :......
  Fly   396 DGPREPRSKTSPTGGPHYRALG---LGQRPYIDGFPSTKA--LHELESLRRSA-----KVAAVTT 450

  Fly   295 GRPAAFTAAPFFGHHAAA------FPTASG----LRGLSGDSQQHQQQQQQHQLATVGAAHSTTS 349
            ...||.|||......|||      .||..|    ..|::|.             |..|.....:|
  Fly   451 AAAAAATAASAANAVAAAAAAVAVTPTGGGGGVAAGGVAGG-------------AGAGLVQQLSS 502

  Fly   350 PEGSPTTTTTSGTQLSAFVQPPMTSSPPPVTSLQHDNNNNNSNNNNSSS--------------HI 400
            ...||.:|..|..|    |..|   :.|.:.:.:.......:|.::||:              |.
  Fly   503 NYSSPNSTINSDCQ----VYKP---NAPHIQAAEMMGAGEWTNGSSSSAAAYYHSHAHHPHAHHA 560

  Fly   401 DAGFESD---------------SISVTGSPRK-------SLGSPLTH-----DEEEAEAEAEAEA 438
            .|..:..               |:.|.|:...       .:|..:.|     |...:....:..|
  Fly   561 HAHLQHQMALPPPPPPPAAAPVSVGVGGNGATMGMGMGVGVGMGMNHYGGGYDSANSLEAGQYAA 625

  Fly   439 EAEAEAEEAEVGGLSRN-------GGGIQGPLHSESSPGSGGAFTALIQRSGKNPTELFGGFAAA 496
            ...|...|....|.:.:       |||..|          ||:       :.|:..:..|.:..|
  Fly   626 HLPAVLPEMHGHGFATDPYQTAGYGGGNTG----------GGS-------ASKSELDYGGSYNQA 673

  Fly   497 GGNHFAPSGHSFNPALAAQLF-------LQSP------LLPQ-----SSQWLYTQLYGSYSDLPW 543
            ..|.:  ..:.:...||...:       .|.|      |.||     :...::..|:.|.....:
  Fly   674 WSNGY--QNYQYGSCLATAQYGPQAAPPPQPPPPPPVVLCPQLYSTVNQNQIHLHLHSSEKLEQY 736

  Fly   544 LRNAAAAAAANIN--PGQENSGIPPLGSNPDHDGVNLIKRCVTLITHNPPDAENANPNASPPVSS 606
            |..|.:|....|.  .|...|.| .:|.:..|..|           |:....:......      
  Fly   737 LGTATSADHLTIGSLTGSSRSSI-EIGQDQYHQQV-----------HHAQQQQQQQQQQ------ 783

  Fly   607 TRRSPSPVETIDLDDVSTTSRSASGSSGHGGGVGGGGAVGPIRTRTPKPSADVWRPY 663
                         ..|....:....|:|..||.|.|| |...|.......:.|||||
  Fly   784 -------------QQVHHPQQQQVESAGEVGGSGAGG-VESAREEDVGDLSQVWRPY 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RunxBNP_001259745.1 Runt 118..239 CDD:279225 93/120 (78%)
lzNP_511099.2 Runt 283..404 CDD:279225 93/120 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 132 1.000 Domainoid score I3175
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D109070at6656
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 1 1.000 - - otm14562
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11950
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
77.020

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