DRSC/TRiP Functional Genomics Resources

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Protein Alignment RunxB and runx3

DIOPT Version :9

Sequence 1:NP_001259745.1 Gene:RunxB / 33051 FlyBaseID:FBgn0259162 Length:663 Species:Drosophila melanogaster
Sequence 2:XP_002936643.1 Gene:runx3 / 100485729 XenbaseID:XB-GENE-487784 Length:396 Species:Xenopus tropicalis


Alignment Length:362 Identity:145/362 - (40%)
Similarity:178/362 - (49%) Gaps:107/362 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 RTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALGEVMDGTIVTIRAGNDENF 173
            |||..:||:|.||||:|.||:.:|:.||:|||.|||||:||||:|||:|.|||:||:.||||||:
 Frog    45 RTVVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDENY 109

  Fly   174 CGELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIVISTNPIQIATYTKAIKVTVDGPREPRS 238
            ..||||.:||||||||:||||||||||||||||||||.:.|:|.|:|||.:||||||||||||| 
 Frog   110 SAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTSPTQVATYHRAIKVTVDGPREPR- 173

  Fly   239 KVRH-------------------QGF---------------HPFAF-------GPQRFGP--DPL 260
              ||                   |.|               :||:.       ||....|  ||.
 Frog   174 --RHRQKLEEQSKPFSDRFSDLRQTFRVQPNSNPRATLTNTNPFSSQAQTQIQGPTDLNPFTDPR 236

  Fly   261 MAGLPFK-LPGFAHHLVGMHSHLHAPDWRAHMALGGRPAAFTAAPFFGHHAAAFPTASGLRGLSG 324
            ....||. ||...      .|....|  |.|.     |:|.::|  |.:.|:  |:.:|:.|:  
 Frog   237 QFERPFSALPSLT------ESRFSDP--RMHY-----PSAMSSA--FSYTAS--PSTTGIGGI-- 282

  Fly   325 DSQQHQQQQQQHQLATVGAAHSTTSPEGSPTTTTTSGTQLSAFVQPPMTSSPPPVTSLQHDNNNN 389
                                    |..|.||||....|.|           |||... ...|.:.
 Frog   283 ------------------------SMTGMPTTTRFHHTYL-----------PPPYPG-SSQNQSG 311

  Fly   390 NSNNNNSSSHIDAGFESDSIS---VTG--SPRKSLGS 421
            ....|.|..|:..|..|.|..   |.|  ||.:.|.|
 Frog   312 PFQTNASPYHLYYGTSSGSYQFSMVAGERSPSRMLSS 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RunxBNP_001259745.1 Runt 118..239 CDD:279225 89/120 (74%)
runx3XP_002936643.1 Runt 54..175 CDD:366336 89/123 (72%)
RunxI 306..396 CDD:369907 13/43 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 213 1.000 Domainoid score I2697
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I3847
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 1 1.000 - - mtm9362
Panther 1 1.100 - - O PTHR11950
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.060

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