DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RunxB and runx1

DIOPT Version :9

Sequence 1:NP_001259745.1 Gene:RunxB / 33051 FlyBaseID:FBgn0259162 Length:663 Species:Drosophila melanogaster
Sequence 2:XP_012813452.1 Gene:runx1 / 100485449 XenbaseID:XB-GENE-483164 Length:500 Species:Xenopus tropicalis


Alignment Length:599 Identity:186/599 - (31%)
Similarity:251/599 - (41%) Gaps:182/599 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 TPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALGEVMDGTIVTIR 166
            |..|::|     :|::||||||:|.||:.:|:.||||||.||||||||||:|||:|.|||:||:.
 Frog    47 TDRNMVE-----VLSDHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVM 106

  Fly   167 AGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIVISTNPIQIATYTKAIKVTVD 231
            ||||||:..||||.||.||||||:||||||||||||||||||||.:.|||.|:|||.:|||:|||
 Frog   107 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVD 171

  Fly   232 GPREPRSKVRHQGFHPFAFGPQRFGPDPLMAGLPFKLPGFAHHLVGMHSHLHAPDWRAHMALGGR 296
            ||||||                |...||::.      ||    |||  ..:.|..:..: :||..
 Frog   172 GPREPR----------------RPKYDPIIG------PG----LVG--GQIQAEIYSIY-SLGKS 207

  Fly   297 PAAFTAAPFFGHHAAA-FPTASGLRGLSGDSQQHQQQQQQHQLATVGAAHSTTSPEGSPTTTTTS 360
            ..:.....|.||.... ..|.||.  ||...:..:.:..:.....|...|.|.:|  :|..|...
 Frog   208 ADSSCVGSFTGHRQKLDEQTKSGT--LSFSERLSELEHLRRTAMRVSPHHPTPTP--NPRATLNH 268

  Fly   361 GTQLSAFVQPPMTSSPPPVTSLQHDNNNNNSNNNNSSSHIDAGFESDSISVTGSPRKS------- 418
            .|   ||       :|.|.:.:|                       |:..|..||..|       
 Frog   269 ST---AF-------NPQPQSQIQ-----------------------DTRQVQASPPWSYDQSYQY 300

  Fly   419 LGSPLTHDEEEAEAEAEAEAEAEAEAEEAEVGGLSRNGGGIQGPLHSESSPGSG----------- 472
            |||..|.....|...:...|.:.... .||:.  ||..|.  ..|.:.|.|..|           
 Frog   301 LGSIATQSVHPATPISPGRASSMTSL-SAELS--SRLSGA--SDLTAFSDPRVGIDRQFSTLPSI 360

  Fly   473 --------GAFTALIQRSGKNPTELFGGF-----AAAGGNHFAPSGHSFNP-----ALAAQLFLQ 519
                    ||||       ..||.:..|.     |......:    |::.|     :..||   .
 Frog   361 SDPRMHYPGAFT-------YTPTPVTSGIGIGMSAMTSATRY----HTYLPPPYPGSSQAQ---S 411

  Fly   520 SPLLPQSSQWLYTQLYGSYSDLPWLRNAAAAAAANINPGQENSGIPPLGSNPDHDGVNLIKRCVT 584
            ||.  |:|...|...||:        :|.:....::..|.:.|  ||          .::..|  
 Frog   412 SPF--QTSSPSYHLYYGT--------SAGSYHQFSMMSGGDRS--PP----------RILPPC-- 452

  Fly   585 LITHNPPDAENANPNASPPVSSTRRSPSPVETIDLDDVSTTSRSASGSSGHGGGVGGGGAVGPIR 649
              |:....:...|||.          |:..:.::.:...:.|.:..|:                 
 Frog   453 --TNASTGSTLLNPNL----------PNQNDVVEAEGSHSNSPTNMGT----------------- 488

  Fly   650 TRTPKPSADVWRPY 663
              ||:....|||||
 Frog   489 --TPRLEEAVWRPY 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RunxBNP_001259745.1 Runt 118..239 CDD:279225 92/120 (77%)
runx1XP_012813452.1 Runt 58..178 CDD:279225 92/135 (68%)
RunxI 407..500 CDD:285676 27/150 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 213 1.000 Domainoid score I2697
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I3847
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 1 1.000 - - mtm9362
Panther 1 1.100 - - O PTHR11950
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.060

Return to query results.
Submit another query.