DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1812 and AT1G27420

DIOPT Version :9

Sequence 1:NP_608397.1 Gene:CG1812 / 33049 FlyBaseID:FBgn0031119 Length:616 Species:Drosophila melanogaster
Sequence 2:NP_174062.1 Gene:AT1G27420 / 839632 AraportID:AT1G27420 Length:346 Species:Arabidopsis thaliana


Alignment Length:395 Identity:88/395 - (22%)
Similarity:142/395 - (35%) Gaps:143/395 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 SSNYPI------DVAEQDLVRLV-CSFAIEQQLNESALGDLLRLIKW------QHIS-----YKS 246
            ||:.||      ||||..:.::. .||.|..|:..          :|      ||.:     ..:
plant     5 SSSSPIIPGLTDDVAELCVSKIPRSSFQITSQVCR----------RWRSFLRSQHFAAVRKLTGT 59

  Fly   247 VDE----LRNMNCSLD--------KGKQL----PLPTSYYNRIKQEHMGHLLNGVVSLKDQSLPQ 295
            |:|    |....|..|        .|.:|    |:|                             
plant    60 VEEFLCVLMESECGRDVYWEVFDASGNKLGQIPPVP----------------------------- 95

  Fly   296 GPTNMRGMELCLL---KI---GGF---EWNGLTNVIMC-------FSPKKMNWYELTAIPHIDQC 344
            ||.. ||..:.:|   ||   ||:   |.:|:.:..:.       |.|...:|.:|..: :|.:.
plant    96 GPLK-RGFGVAVLDGGKIVFFGGYTEVEGSGINSTTVSASADVYEFDPANNSWRKLAGM-NIPRY 158

  Fly   345 NFGTAVLNNKLFIVGG----AYDVFLKEYIHP----FGFCYCPLRNTWMTIAPIQQDRCRFSLNA 401
            ||..|.:|..|:::.|    .|.:...|..:|    :...:||.|..|...|        |:.::
plant   159 NFAFAEVNGLLYVIRGYSTDTYSLSNAEVYNPKTNQWSLMHCPNRPVWRGFA--------FAFSS 215

  Fly   402 VGTQHLYAVGGILDDDNEEALRMISNVERYDIAKNVWTYMPSLQENRSQHAGVVVGDKLYISGGV 466
                .|||||        ...|.|   :.||.....|..:.| :::.|.::..||.:|:|...  
plant   216 ----KLYAVG--------NGSRFI---DIYDPKTQTWEELNS-EQSVSVYSYTVVRNKVYFMD-- 262

  Fly   467 HLANILASMWVFDTKTEVWQELASMPTPCCDHVLVAV-DNRIY----ACGGWHESL--------- 517
              .|:...:.|||.:...|..:...|......|.:.| :|::.    .||  ||:|         
plant   263 --RNMPGRLGVFDPEENSWSSVFVPPREGGFWVRLGVWNNKVLLFSRVCG--HETLMYDLDKEKG 323

  Fly   518 TEWRV 522
            ::|||
plant   324 SKWRV 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1812NP_608397.1 BTB 38..142 CDD:279045
PHA03098 46..588 CDD:222983 88/395 (22%)
BACK 151..249 CDD:285009 16/66 (24%)
KELCH repeat 344..390 CDD:276965 14/53 (26%)
KELCH repeat 394..444 CDD:276965 11/49 (22%)
Kelch 406..458 CDD:128874 14/51 (27%)
Kelch_1 448..492 CDD:279660 10/43 (23%)
KELCH repeat 448..492 CDD:276965 10/43 (23%)
Kelch_1 494..539 CDD:279660 11/43 (26%)
KELCH repeat 495..539 CDD:276965 11/42 (26%)
AT1G27420NP_174062.1 F-box 9..50 CDD:395521 12/50 (24%)
PHA03098 <81..286 CDD:222983 56/263 (21%)
KELCH repeat 100..153 CDD:276965 13/52 (25%)
KELCH repeat 157..202 CDD:276965 10/44 (23%)
KELCH repeat 205..242 CDD:276965 13/59 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1072
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I2576
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.860

Return to query results.
Submit another query.