DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1812 and AT5G60570

DIOPT Version :9

Sequence 1:NP_608397.1 Gene:CG1812 / 33049 FlyBaseID:FBgn0031119 Length:616 Species:Drosophila melanogaster
Sequence 2:NP_001331512.1 Gene:AT5G60570 / 836178 AraportID:AT5G60570 Length:393 Species:Arabidopsis thaliana


Alignment Length:242 Identity:51/242 - (21%)
Similarity:100/242 - (41%) Gaps:54/242 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 MCFSPKKMNWYELTAIPHIDQCNFGTA-----VLNNKLFIVGGAYDVFLKEYIHPFGFCYCPLRN 382
            :.|||.|..|..|..:| .|:| |..|     .::::|.:.|        ..:..|......||:
plant   113 LMFSPMKKKWMVLPKMP-CDEC-FNHADKESLAVDDELLVFG--------RELFQFAIWKYSLRS 167

  Fly   383 -TWMTIAPIQQDRCRFSLNAVGTQHLYAVGGILDDDNEEALRMISNVERYDIAKNVWTYMPSLQE 446
             .|:....:.:.||.|:..::|...:.|.|..::.:      ::::.|.||.:...|..:|::..
plant   168 RCWVKCEGMHRPRCLFASGSLGGIAIVAGGTDMNGN------ILASAELYDSSSGRWEMLPNMHS 226

  Fly   447 NRSQHAGVVVGDKLYISGGVHLANILASMW-VFDTKTEVWQEL---------ASMPTPCCDHVLV 501
            .|...:|..:..|.|:.||:...|:..:.. .||.:|..|:::         |:...|    ::|
plant   227 PRRLCSGFFMDGKFYVIGGMSSPNVSVTFGEEFDLETRKWRKIEGMYPNVNRAAQAPP----LVV 287

  Fly   502 AVDNRIYACGGWHESLTEWRVLVEH----IYAYDIETNTWSVETKIP 544
            .|:|.::.              :|:    :..||...|.|.|..::|
plant   288 VVNNELFT--------------LEYSTNMVKKYDKVKNKWEVMGRLP 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1812NP_608397.1 BTB 38..142 CDD:279045
PHA03098 46..588 CDD:222983 51/242 (21%)
BACK 151..249 CDD:285009
KELCH repeat 344..390 CDD:276965 9/51 (18%)
KELCH repeat 394..444 CDD:276965 11/49 (22%)
Kelch 406..458 CDD:128874 9/51 (18%)
Kelch_1 448..492 CDD:279660 12/53 (23%)
KELCH repeat 448..492 CDD:276965 12/53 (23%)
Kelch_1 494..539 CDD:279660 9/48 (19%)
KELCH repeat 495..539 CDD:276965 8/47 (17%)
AT5G60570NP_001331512.1 F-box 50..93 CDD:366220
PHA03098 <120..325 CDD:222983 47/235 (20%)
KELCH repeat 180..225 CDD:276965 11/50 (22%)
KELCH repeat 228..272 CDD:276965 11/43 (26%)
KELCH repeat 278..320 CDD:276965 11/59 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1072
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I2576
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.860

Return to query results.
Submit another query.