DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1812 and SKIP6

DIOPT Version :9

Sequence 1:NP_608397.1 Gene:CG1812 / 33049 FlyBaseID:FBgn0031119 Length:616 Species:Drosophila melanogaster
Sequence 2:NP_565522.1 Gene:SKIP6 / 816731 AraportID:AT2G21950 Length:372 Species:Arabidopsis thaliana


Alignment Length:362 Identity:79/362 - (21%)
Similarity:136/362 - (37%) Gaps:104/362 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 LTAIPHIDQCNFGTAVLNNKLF--------------IVGGAYDV-FLKEYIHP-FGFCYCPLRNT 383
            |:.:..:.:|::....|.:|.|              :||...:: ::...|.| .|.|:..|.:.
plant    30 LSCLARVPRCHYPILSLVSKTFRSLPTSPLLYATRALVGATENILYVAIRIPPESGACWFTLLHR 94

  Fly   384 WMT-------IAPIQQDRCRFSLNAVGTQH------LYAVGGILDDDNEEALRMISNVERYDIAK 435
            .::       :.||..  |. |.:.||:.:      :|.:||.:.|...      |:|...|...
plant    95 TLSNSTNSKMLVPIPS--CP-SPSLVGSAYVVVDSEIYVIGGSIRDVPS------SSVWVLDCRF 150

  Fly   436 NVWTYMPSLQENRSQHAGVVVGDKLYISGGVHLANILASM-W--VFDTKTEVWQELASMPTPCCD 497
            :.|..:.:::..|...|..|:..|:|:.||..:.|...|: |  :||.||:.|:.:||   |..:
plant   151 HTWRRVSNMRVGREFAAAGVIDGKIYVIGGCVVDNWARSINWAEMFDIKTQTWEPVAS---PGME 212

  Fly   498 ------HVLVAVDNRIYACGGWHESLTE----------------WR---VLVEHI-YAYDI---- 532
                  |....::.::||....:..:.|                ||   .::|:| |.||.    
plant   213 VREKWMHASAVMEGKVYAMADRNGVVYEPKEKKWEMPEKRLDLGWRGRACVIENILYCYDYLGKI 277

  Fly   533 -----ETNTW----SVETKIPAPKFYTGVTAMGR----TIFFVGGLDSTESIDRASAETMAYDLD 584
                 :...|    .||:   .|||..|.|...|    |:.:.|...|..|   ...|....::|
plant   278 RGYDPKERIWRELKGVES---LPKFLCGATMANRGGKLTVLWEGKAGSGGS---RRMEIWCAEID 336

  Fly   585 T-----KEWWHEKDSWDS-----PNDVWESTCVAIYV 611
            .     :|.| .|..|..     ||:.....|:|..|
plant   337 VGRRGEREIW-GKIEWSGTVLTVPNESAIVNCLAATV 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1812NP_608397.1 BTB 38..142 CDD:279045
PHA03098 46..588 CDD:222983 70/332 (21%)
BACK 151..249 CDD:285009
KELCH repeat 344..390 CDD:276965 11/68 (16%)
KELCH repeat 394..444 CDD:276965 12/55 (22%)
Kelch 406..458 CDD:128874 11/57 (19%)
Kelch_1 448..492 CDD:279660 17/46 (37%)
KELCH repeat 448..492 CDD:276965 17/46 (37%)
Kelch_1 494..539 CDD:279660 13/83 (16%)
KELCH repeat 495..539 CDD:276965 12/82 (15%)
SKIP6NP_565522.1 F-box 21..64 CDD:279040 5/33 (15%)
Kelch_1 117..160 CDD:279660 10/48 (21%)
KELCH repeat 122..159 CDD:276965 8/42 (19%)
muta_rot_YjhT 153..>352 CDD:274641 48/208 (23%)
KELCH repeat 163..212 CDD:276965 18/51 (35%)
Kelch_1 163..210 CDD:279660 17/49 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1072
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I2576
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.860

Return to query results.
Submit another query.