DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1812 and SKIP6

DIOPT Version :10

Sequence 1:NP_608397.1 Gene:CG1812 / 33049 FlyBaseID:FBgn0031119 Length:616 Species:Drosophila melanogaster
Sequence 2:NP_565522.1 Gene:SKIP6 / 816731 AraportID:AT2G21950 Length:372 Species:Arabidopsis thaliana


Alignment Length:362 Identity:79/362 - (21%)
Similarity:136/362 - (37%) Gaps:104/362 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 LTAIPHIDQCNFGTAVLNNKLF--------------IVGGAYDV-FLKEYIHP-FGFCYCPLRNT 383
            |:.:..:.:|::....|.:|.|              :||...:: ::...|.| .|.|:..|.:.
plant    30 LSCLARVPRCHYPILSLVSKTFRSLPTSPLLYATRALVGATENILYVAIRIPPESGACWFTLLHR 94

  Fly   384 WMT-------IAPIQQDRCRFSLNAVGTQH------LYAVGGILDDDNEEALRMISNVERYDIAK 435
            .::       :.||..  |. |.:.||:.:      :|.:||.:.|...      |:|...|...
plant    95 TLSNSTNSKMLVPIPS--CP-SPSLVGSAYVVVDSEIYVIGGSIRDVPS------SSVWVLDCRF 150

  Fly   436 NVWTYMPSLQENRSQHAGVVVGDKLYISGGVHLANILASM-W--VFDTKTEVWQELASMPTPCCD 497
            :.|..:.:::..|...|..|:..|:|:.||..:.|...|: |  :||.||:.|:.:||   |..:
plant   151 HTWRRVSNMRVGREFAAAGVIDGKIYVIGGCVVDNWARSINWAEMFDIKTQTWEPVAS---PGME 212

  Fly   498 ------HVLVAVDNRIYACGGWHESLTE----------------WR---VLVEHI-YAYDI---- 532
                  |....::.::||....:..:.|                ||   .::|:| |.||.    
plant   213 VREKWMHASAVMEGKVYAMADRNGVVYEPKEKKWEMPEKRLDLGWRGRACVIENILYCYDYLGKI 277

  Fly   533 -----ETNTW----SVETKIPAPKFYTGVTAMGR----TIFFVGGLDSTESIDRASAETMAYDLD 584
                 :...|    .||:   .|||..|.|...|    |:.:.|...|..|   ...|....::|
plant   278 RGYDPKERIWRELKGVES---LPKFLCGATMANRGGKLTVLWEGKAGSGGS---RRMEIWCAEID 336

  Fly   585 T-----KEWWHEKDSWDS-----PNDVWESTCVAIYV 611
            .     :|.| .|..|..     ||:.....|:|..|
plant   337 VGRRGEREIW-GKIEWSGTVLTVPNESAIVNCLAATV 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1812NP_608397.1 BTB_POZ 33..151 CDD:453885
PHA03098 46..588 CDD:222983 70/332 (21%)
KELCH repeat 344..390 CDD:276965 11/68 (16%)
KELCH repeat 394..444 CDD:276965 12/55 (22%)
KELCH repeat 448..492 CDD:276965 17/46 (37%)
KELCH repeat 495..539 CDD:276965 12/82 (15%)
SKIP6NP_565522.1 F-box_AtAFR-like 20..64 CDD:438923 5/33 (15%)
NanM 107..335 CDD:442289 57/245 (23%)
KELCH repeat 122..159 CDD:276965 8/42 (19%)
KELCH repeat 163..212 CDD:276965 18/51 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.