DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1812 and klhdc8b

DIOPT Version :9

Sequence 1:NP_608397.1 Gene:CG1812 / 33049 FlyBaseID:FBgn0031119 Length:616 Species:Drosophila melanogaster
Sequence 2:XP_001339575.2 Gene:klhdc8b / 799189 ZFINID:ZDB-GENE-090313-174 Length:359 Species:Danio rerio


Alignment Length:211 Identity:47/211 - (22%)
Similarity:85/211 - (40%) Gaps:14/211 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   379 PLRNTWMTIAPIQQDRCRFSLNAVGTQHLYAVGGILDDDNEEALRMISNVERYDIAKNVWTYMPS 443
            |:::.:..:.|....:..:....:....||.:||.    :|..| .:.:.|..|:....|..:|.
Zfish    10 PVKSLYWEVFPSMATQRVYCTPILWAGRLYVLGGC----SENGL-PLDSAEVLDLESQRWCELPP 69

  Fly   444 LQENRSQHAGVVVGDKLYISGGVHL-ANILASMWVFDTKTEVWQELASMPTPCCDHVLVAVDNRI 507
            |...|:..:.|.|||:|.:.||:.. .:.|||:.|:......|:....:..|......:..|.::
Zfish    70 LPTARAGASAVAVGDQLMVMGGMDAQQSPLASVEVYHPDEGKWERKTGLGQPSMGITTLEKDGKV 134

  Fly   508 YACGGWHESLTEWRVLVEHIYAYDIETNTWSVETKIPAPKFYTGVTAMGRTIFFVGGLDSTESID 572
            ||.||.....|....    :..|:...:.|...|.:|.|::.......|..|:.:||......:.
Zfish   135 YALGGMGADTTPQAT----VRLYEATKDQWLPLTSMPTPRYGAFSFLRGNKIYVLGGRQGKLPVT 195

  Fly   573 RASAETMAYDLDTKEW 588
            ...    |:||:.|.|
Zfish   196 AFE----AFDLEMKSW 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1812NP_608397.1 BTB 38..142 CDD:279045
PHA03098 46..588 CDD:222983 46/209 (22%)
BACK 151..249 CDD:285009
KELCH repeat 344..390 CDD:276965 1/10 (10%)
KELCH repeat 394..444 CDD:276965 10/49 (20%)
Kelch 406..458 CDD:128874 14/51 (27%)
Kelch_1 448..492 CDD:279660 13/44 (30%)
KELCH repeat 448..492 CDD:276965 13/44 (30%)
Kelch_1 494..539 CDD:279660 9/44 (20%)
KELCH repeat 495..539 CDD:276965 8/43 (19%)
klhdc8bXP_001339575.2 BTB <16..208 CDD:333434 46/205 (22%)
KELCH repeat 26..70 CDD:276965 10/48 (21%)
KELCH repeat 74..119 CDD:276965 13/44 (30%)
KELCH repeat 122..168 CDD:276965 9/49 (18%)
KELCH repeat 170..214 CDD:276965 9/42 (21%)
BTB <175..343 CDD:333434 9/37 (24%)
KELCH repeat 276..322 CDD:276965
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.