DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP19D and Arhgap27

DIOPT Version :9

Sequence 1:NP_001285496.1 Gene:RhoGAP19D / 33048 FlyBaseID:FBgn0031118 Length:2206 Species:Drosophila melanogaster
Sequence 2:NP_942054.1 Gene:Arhgap27 / 303583 RGDID:735202 Length:869 Species:Rattus norvegicus


Alignment Length:891 Identity:214/891 - (24%)
Similarity:307/891 - (34%) Gaps:292/891 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   713 DPVPVGSS-----------------KFVTLPDKPDKGSSVATLADIAESSAAAIVDSASGSGNVV 760
            ||||....                 :||:.|...| ||| |.....|.|.........||..|  
  Rat    72 DPVPAPQPSVLQQRPTVPEPLAYDYRFVSTPVGAD-GSS-AEPRGRASSLCGPARQRTSGQRN-- 132

  Fly   761 RRYKPLSSSSFDEGKP----MRRISYLRATNNETDFNAEAAAGGDAAATGASGPASASAASSAPG 821
                     |...|.|    :|..:.:|...:..|.    |.||.|...|..|.|....|||..|
  Rat   133 ---------SLAPGGPACLYLRPAAPVRPAQSLDDL----ARGGTAPPAGLLGSAGHFKASSVAG 184

  Fly   822 ----PTP----------SSAP---APAPAPAPLPI-SIPIPVAAVVE-------------PQKTK 855
                |.|          .:.|   .|..|.:|..: ..|.||.|.||             |.:..
  Rat   185 SWVCPRPLARSDSENVYEAIPDLRCPPRAKSPKQVDEPPEPVYANVERQPQVTSPRSAAAPPRLS 249

  Fly   856 SLVEEHPDPTYDVIGGTGGGHEF------------IETPNGLEDVRLSAHGSRRASMSSDMRSSI 908
            .:.|.|.|      .|||..:.:            .|.|.|......|     |||:.|.     
  Rat   250 PVWETHTD------AGTGRPYYYNPDTGVTTWESPFEAPEGATSPTTS-----RASVGSG----- 298

  Fly   909 HIDAELNGKYVPNELEAFETEIEIKSSCINGKRMSEYRSWRQVKLEIKGDLLRIYSGRHAKSEHN 973
                           |:.|||                  |.|...|..|   |::.......| .
  Rat   299 ---------------ESLETE------------------WGQYWDEESG---RVFFYNPLTGE-T 326

  Fly   974 VIELDIRNFKFFDESMDKKKYLIRMQSKPSPSGAHLASLGNEL--NLDEGHDKLLTS-------- 1028
            |.|.:.      :|..|..:..:.||...||     .|.|.:.  ..:..:.:||||        
  Rat   327 VWEDET------EELEDDPEEQLEMQPSLSP-----RSPGQQRPPTPETDYPELLTSYPEEDYSP 380

  Fly  1029 SGSSSANEPAANAASALTASTSSSTCSSGPYTEILFKTKSSNEMKRLFGLLQWKDSLNYDDNEHQ 1093
            .||.|...|    .|.|.|....| |...|..::|:..:.:.|        ||   :..:|.|.:
  Rat   381 VGSFSDLGP----TSPLVAPPGWS-CQITPEKQMLYTNQFTQE--------QW---VRLEDQEGK 429

  Fly  1094 P-------QGKQLAEPQKTV-ASASYLDDVQGGASAADSSP------------------------ 1126
            |       ...|...||..| |..|.....|...:.|.:||                        
  Rat   430 PYFYNPEDSSVQWELPQVPVPAPRSGRKSSQDSDTPAQASPPEEKIKTLDKAGVLHRTKTVDKGK 494

  Fly  1127 --LSSH--------SGGI---------ADASGSHHVSAL--PAAAAIVAATSDSISPVMKARK-- 1168
              ...|        .||:         :.|||....|.|  |.....:...|.|.:|..|:.|  
  Rat   495 RLRKKHWNASWTVLEGGVLTFFKDSKTSAASGLRQPSKLSTPEYTVELRGASLSWAPKDKSSKKN 559

  Fly  1169 ----------------------SSSHKHI-----------PDKDLGSPKSK---------NWKDL 1191
                                  |:.||.|           |.::.|.|.|.         :||:.
  Rat   560 VLELRSRDGSEYLIQHDSEAIISTWHKAIAEGIEELSADLPQREEGEPSSADFGSSERLGSWKEE 624

  Fly  1192 LFRRGGSG---SGGVSHHDLA------------SPSACAAKQIGSIGVPLRSCPMSKV----NAY 1237
            ..|...:.   :.|....||:            .|:..:.::.|.|...:..|.::::    .:.
  Rat   625 DVRPNAASPSLNPGSQESDLSRVRHKLRKFLQRRPTLQSLREKGYIKDQVFGCALAQLCERERSP 689

  Fly  1238 VPHLVEVCTNIVETKGLGVVGIYRIPGNKAAISELSELVNTKDFQFESCASDDRWEDVNVVSSLL 1302
            ||..|:.|...||.:||.:.|:|||.||.|.|.:|...|   |........|.|||||:|::..|
  Rat   690 VPRFVQQCIRTVEARGLDIDGLYRISGNLATIQKLRYKV---DHDERLDLDDGRWEDVHVITGAL 751

  Fly  1303 KLFIRSLPDALMPASYYINFIEADK-KFGLERIVLLREIVESLPRHPYETMKHLIRHLCRVSGNC 1366
            |||.|.||:.|.|.|::..||.|.| :...:|...:|::|.:||...::|::.||:|||||..:.
  Rat   752 KLFFRELPEPLFPFSHFHQFIAAIKLQDPAQRSRCVRDLVRTLPAPNHDTLRLLIQHLCRVIEHG 816

  Fly  1367 DVNRMEPKNLAIIFGPSIIRTPNDTLETAVKDMKHQCRIVELLVTQ 1412
            :.|||..:|:||:|||:::| |.....:....|..|.::|||::.|
  Rat   817 EQNRMSVQNVAIVFGPTLLR-PEMEEASMPMTMVFQNQVVELILHQ 861

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP19DNP_001285496.1 PDZ_signaling <151..205 CDD:238492
RhoGAP_ARHGAP21 1221..1417 CDD:239860 72/197 (37%)
Arhgap27NP_942054.1 SH3 10..66 CDD:302595
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 104..137 11/45 (24%)
WW 248..278 CDD:278809 6/35 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 275..299 8/48 (17%)
WW 301..328 CDD:278809 9/48 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 331..389 15/68 (22%)
WW 418..445 CDD:278809 7/37 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 447..474 7/26 (27%)
PH_ARHGAP9-like 480..594 CDD:270053 18/113 (16%)
PH 480..593 CDD:278594 18/112 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 598..644 8/45 (18%)
RhoGAP_ARHGAP27_15_12_9 675..861 CDD:239868 70/189 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23176
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.