DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP19D and rga3

DIOPT Version :9

Sequence 1:NP_001285496.1 Gene:RhoGAP19D / 33048 FlyBaseID:FBgn0031118 Length:2206 Species:Drosophila melanogaster
Sequence 2:NP_594871.1 Gene:rga3 / 2542306 PomBaseID:SPAC29A4.11 Length:969 Species:Schizosaccharomyces pombe


Alignment Length:1022 Identity:200/1022 - (19%)
Similarity:349/1022 - (34%) Gaps:355/1022 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   543 GYDMYHSGGKLVQRSSTAPGSVCHQHQQQQQHHLYHQQQH----QQLQQTQHRQVMINNNAKYAK 603
            |||.||       |....    ||..::|.....:.:...    ...:|.:|.....:.:|.|..
pombe    93 GYDSYH-------RECFR----CHDCRKQIIDSNFKRDNRTIFCNDCKQVRHPSRSSDESADYHN 146

  Fly   604 DLDYFE---TLQETGVTNKVFERKLVS--HMSKGFDPFKPLS-----------INTSALESS--- 649
                ||   |::.|...:.|...|.:|  .||....|..|..           .|.|..|..   
pombe   147 ----FEVDVTIKPTETKSSVESNKSLSIEIMSPQKPPLSPFGGSRDRLVSETPTNMSQAEGGNVP 207

  Fly   650 --------ASTSSTSATTTVKKQS----VLYESLQQH------------PLAKYHQTQQ-QTTTT 689
                    ||.|:.|...:.|.:|    ..:||..::            ||.|.::.|| ::.|.
pombe   208 NDGQDSNLASNSADSLLPSAKNRSFSSFTSFESPMKYDDSFFPISPSISPLQKVNKQQQIESPTA 272

  Fly   690 TTVDGQTSSRMELHKATLANATIDPVPVGSSKFVTLPDKPDKGSSVATLADIAESSAAAIVDSAS 754
            |....:.:.:...|  |....:..||             .|..||.:....|.|.:    :|..:
pombe   273 TFPLSKNTWKNRFH--TFHKQSFTPV-------------NDSSSSDSLKPTINEEA----LDDFA 318

  Fly   755 GSGNVVRRYKPLSSSSFDEGKPMRRISYLRATNNETDFNAEAAAGGDAAATGASGPASASAASS- 818
            ||.:   .||.:|.:  |..:|:....::|:.:|               ||....|.|.|..|| 
pombe   319 GSAS---PYKTMSLT--DRAEPIVMNGHMRSLHN---------------ATSPFRPFSPSYRSSD 363

  Fly   819 --AP---GPTPSSAPAPAPAPAPLPISIPIPVAAVVEPQKTKSLVEEHPDPTYDVIGGTGGGHEF 878
              :|   .|...:....:..|:.|.     ..|.::.|.:..|     |.|       .||||:.
pombe   364 THSPRTRSPNVQTHKKTSSQPSDLS-----SFAQLLSPPQVLS-----PKP-------NGGGHKS 411

  Fly   879 IETPNGLEDV-------RLSAHGSRRASMSSDMRSSIHIDAELNGKYVPNELEAFETEIEIKSSC 936
            ....:.|.:.       .|.::|...  :.::..||....:|.:     :::|....::|..::.
pombe   412 FRHSHSLSETSQQTLVPSLGSNGEYH--LPTNDHSSTPAQSERD-----SDVEELREQLENLTAL 469

  Fly   937 INGKRMSE------YRSWRQVKLEIKGDLLRIYSGRHAKSEHNVIELDIRNFKFFDESMDKKKYL 995
            .  |::||      :.:.:.::.|.|..:      |.||     :|:..:.|.|.|.:.|.....
pombe   470 T--KKLSERLSSSTFDNSKFIRTEDKDTV------RSAK-----LEICEKFFSFADVTDDPTLKD 521

  Fly   996 IRMQSKPSPSGAHLA----SLGNELN---------LDEGHD--KLLTSSGSSSAN---------- 1035
            .:.|...:.:.|::|    |.|.|:|         ||:.::  |:|..|..:|.:          
pombe   522 PKHQDLVAAANAYMAMLRESYGTEINNLLERRNELLDDYNNVQKILNESLEASVHLNTKNLELAD 586

  Fly  1036 ---------------EPAANAASALTASTSSSTCSSGPYTEILFKTKSSNEMKRLFGLLQWKDSL 1085
                           |..:|....:|.|:.::|.|..|.|.:     |||               
pombe   587 LNNNLVKQIQHRVPPENQSNLEHTITTSSKNTTSSINPLTAV-----SSN--------------- 631

  Fly  1086 NYDDNEHQPQGKQLAEPQKTVASASYLDDVQGGASAADSSPLSSHSGGIADASGSHHVSALPAAA 1150
                                           .|.|:....|||.:..                  
pombe   632 -------------------------------SGQSSGRPGPLSPNLN------------------ 647

  Fly  1151 AIVAATSDSISPVMKARKSSSH-------KHIPDKDLGSPKSKNWKDLLFRRGGSGSGGVSH-HD 1207
              |....|     :|.:|.|.|       :.:|.|.:.: |||:...::.....:....|.| :.
pombe   648 --VTTRID-----IKGKKGSMHLQPRDVNRKVPFKSMHT-KSKSADPVVGNEDRTQCDHVFHVNA 704

  Fly  1208 LASPSACAAKQIGSIGVPLR------SC----------------PMSKV---------------- 1234
            :..||.|........|..||      ||                .||:.                
pombe   705 IFKPSRCYICSESVWGSELRCFHCSISCHSRCLKRLFAESEHEKTMSETVSENSKWMPEMPTRMP 769

  Fly  1235 --------------------NAYVPHLVEVCTNIVETKGLGVVGIYRIPGNKAAISELSELVNTK 1279
                                .:.:|.::.:|.:.|:..||.|.|||||.|:.:.:..|.:     
pombe   770 PPGPSPTMFGRSLENQLKIEGSVLPQVIAMCVSCVDAHGLEVEGIYRISGSASQVRVLVD----- 829

  Fly  1280 DFQFESCASDDRWEDVNVVSSLLKLFIRSLPDALMPASYYINFIEADK----KFGLERIVLLREI 1340
            :|:..|...:....|:...:|:||.::..||:.::|.:.|...:||:|    :..:||:|   |:
pombe   830 EFENGSIRMEHLTSDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEEEKIERVV---EV 891

  Fly  1341 VESL-PRHPYETMKHLIRHLCRVSGNCDVNRMEPKNLAIIFGPSIIR 1386
            :::| |.| ....:.||.||.||..:.:.|.|..||::.:|.|:::|
pombe   892 MKTLHPAH-LSVFRFLIAHLGRVCKHAEKNLMNSKNVSTVFAPTLMR 937

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP19DNP_001285496.1 PDZ_signaling <151..205 CDD:238492
RhoGAP_ARHGAP21 1221..1417 CDD:239860 53/229 (23%)
rga3NP_594871.1 LIM 18..74 CDD:214528
LIM 78..128 CDD:259829 9/45 (20%)
C1 698..743 CDD:237996 10/44 (23%)
RhoGAP 791..962 CDD:214618 46/156 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001164
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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