DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP19D and rrc-1

DIOPT Version :9

Sequence 1:NP_001285496.1 Gene:RhoGAP19D / 33048 FlyBaseID:FBgn0031118 Length:2206 Species:Drosophila melanogaster
Sequence 2:NP_001024683.1 Gene:rrc-1 / 181195 WormBaseID:WBGene00009800 Length:759 Species:Caenorhabditis elegans


Alignment Length:655 Identity:143/655 - (21%)
Similarity:219/655 - (33%) Gaps:216/655 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1136 DASGSHHVSA------LPAAAAIVAATSDSISPVMKARKSSSHK-------HIPDKDLGSPKSKN 1187
            |:.|.|...|      :||.||.| .|.|     .:..:||..:       .|.:....||..:.
 Worm   147 DSRGGHFEPAEETSINVPAIAAAV-VTKD-----FEPTESSQLRLRVGDIVSITEMSTASPSEQT 205

  Fly  1188 -WKDLLFRRGGSGSGGVSHHDLASPSACAAKQIG-SIGVPLRSCPM-----------------SK 1233
             ||..|         .:|:..:..|...   ::| .||...|.|.|                 |.
 Worm   206 FWKAKL---------TISNQKIVDPQNA---RLGFEIGYFPRDCVMLIDDKRLPNPLNNEQKAST 258

  Fly  1234 VNA------------------------------YVPHLVEVCTNIVETKGLGVVGIYRIPGNKAA 1268
            .||                              .||.:||.|...:|.:|: |.||||..|.::.
 Worm   259 RNARRYMTTMFRNRRREPIFGLELTDLYMRTGKKVPVIVEKCCASIEDQGI-VTGIYRQCGIQSN 322

  Fly  1269 ISELSELVNTKDFQFESCASDDRWE----DVNVVSSLLKLFIRSLPDALMPASYYINFIEA-DKK 1328
            |..|..       :|:|.|..|..|    |:..||||||.:.|.||:.|.....|...||| :|:
 Worm   323 IQRLRA-------KFDSGAEPDLHEFGQRDIYSVSSLLKQYFRQLPNPLFTYQAYPKLIEAFEKE 380

  Fly  1329 FGL-ERIVLLREIVESLPRHPYETMKHLIRHLCRVSGNCDVNRMEPKNLAIIFGPSIIRTP---- 1388
            ..| |::..||..:|::|...|.|.|.|:.||.|:..:..:..|..|||||::.|::.|.|    
 Worm   381 DSLSEKVESLRFSLETMPEAHYRTAKFLMEHLTRLCKSKSLTDMTSKNLAIVWSPNLFRPPPTLN 445

  Fly  1389 -NDT-------LETAVKDM----------------KHQCRIVELLVT-----------------Q 1412
             .||       :.||:.|.                :.:|..||...|                 :
 Worm   446 GADTHLLSGLNVHTAICDFFIENSESLFVNDIDEEQSKCTSVENSFTTISKSATMSDMRSESESK 510

  Fly  1413 YDYFFEGGSLPDI-------------------AEV---SGGTAAVSAAQPQQQTQEDQTSMLLH- 1454
            :..||.|.|:...                   :||   |..|.:.|.....|.::.|....|:| 
 Worm   511 WPRFFRGKSVEGFWKFNRKQQTSTGELCGSPTSEVKWRSRSTRSHSTDAAFQSSRTDSFIQLMHT 575

  Fly  1455 ------NLSKIERITERETTRTSRFMPQLRRKTHGKRSAVNSDTYSGESVLVSGSSSN------- 1506
                  ...:|.|...|....|||..|..|.:               .:...:|||:|       
 Worm   576 GMDQIREGMRIFRARARSMRPTSRPPPSPRTR---------------RARFSNGSSNNVQKLNES 625

  Fly  1507 --------TTTTTTTTTHTTSSTSSSNTITTTISTTTIQQRRAQRKAVQSICDQALILLLPT--- 1560
                    .||..:.|....::......:|.|||......:..:...::.:.::.::....|   
 Worm   626 DIQHEIPLATTEPSITPEPKNTVDPHQIMTRTISVNDSDDQSFEENGLREMRERKVMFKAATQEH 690

  Fly  1561 ---------PVSSVSLPFQSLDYAKASASASASASSTASTSSSSTLHSGGKASASSSSSSTTKFS 1616
                     ||...|      ..::.|.....|.....|.|.:.|.:.....:..|.::....|.
 Worm   691 VATFHERSSPVEEWS------SDSRESLHLEMSRYDNVSPSGTITRNQREPITNLSPAAQMLFFE 749

  Fly  1617 SSSSS 1621
            ||.:|
 Worm   750 SSRAS 754

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP19DNP_001285496.1 PDZ_signaling <151..205 CDD:238492
RhoGAP_ARHGAP21 1221..1417 CDD:239860 75/293 (26%)
rrc-1NP_001024683.1 PX_domain 41..146 CDD:295365
SH3 168..238 CDD:302595 18/87 (21%)
RhoGAP 276..466 CDD:295372 63/197 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2255
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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