DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1695 and Sgsm2

DIOPT Version :9

Sequence 1:NP_728346.2 Gene:CG1695 / 33046 FlyBaseID:FBgn0031116 Length:1192 Species:Drosophila melanogaster
Sequence 2:XP_006246802.1 Gene:Sgsm2 / 303304 RGDID:1306957 Length:1050 Species:Rattus norvegicus


Alignment Length:1239 Identity:543/1239 - (43%)
Similarity:714/1239 - (57%) Gaps:257/1239 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 VSNAETELKERLIASVKKEVKQLMEEAVTKKYVHEESSSVTSLCGAVEACLSHGLRRRALGLFKT 86
            :.:||..:||:|:.:|||||||:||||||:|:|||:||.:.:|||||||||.|.|||||.|..::
  Rat     1 MGSAEDAVKEKLLWNVKKEVKQIMEEAVTRKFVHEDSSHIIALCGAVEACLLHQLRRRAAGFLRS 65

  Fly    87 SSTTALIQKIAKICPEADYVSRRLLELELAQESHAVSGKRSSCSSDSIIKPKLLSKGSGSSNSVT 151
            ....||..|:.|.||.|..:..::.||:...|     |:|.|..|...::.:      |||:..|
  Rat    66 DKMAALFTKVGKTCPVAGDICHKVQELQQQAE-----GRRPSGGSQEALRKQ------GSSSGKT 119

  Fly   152 TINTVTNGAGAGPGGGGGASAPLG-KYLWIRLALHEKRLAKIIEHLVSNANSYYDREALVADPDY 215
            |                 |.:|.. |::|:|.||.||.|.:::::|..|.:.||::|||:|||.:
  Rat   120 T-----------------ALSPQALKHIWVRTALMEKVLDRVVQYLAENCSKYYEKEALLADPVF 167

  Fly   216 GSILSSLLVGPCALEFTRAKTADHYWSDPCADELVQRHRI-SSGNRTPPTTHRPIINFKRSLHTS 279
            |.||:.|||||||||:|:.|||||||:||.|||||||||| ...||......||.:.. |..|  
  Rat   168 GPILACLLVGPCALEYTKLKTADHYWTDPSADELVQRHRIRGPPNRQDSPAKRPALGI-RKRH-- 229

  Fly   280 SEDTSSGSFKACSPASVAKDYVESLHQNSRTTLLYGKNNVLVLPKDVSEPMPGYLSLHQSIQSLT 344
                ||||......|:.|::|||||||||||.||||||||||.||:..|.:|||||||||.::||
  Rat   230 ----SSGSASEDRLAACAREYVESLHQNSRTRLLYGKNNVLVQPKEDMEAVPGYLSLHQSAENLT 290

  Fly   345 IKWTPNQLMNGYNDGDGGDKSFYWSYALNINVDEIVYVHCHQNRGGDTGGTIILVGQDGVQRPPI 409
            :||||||||||.......:||.||.|||.:...:||.|||||.:   :|||::||.|||:||||:
  Rat   291 LKWTPNQLMNGTLGDSELEKSVYWDYALVVPFSQIVCVHCHQQK---SGGTLVLVSQDGIQRPPL 352

  Fly   410 HFPEGGHLQAFLSCLETGLLPHGQLDPPLWSQRGIGKLFPWPKSVRRHILPSV--MEAG-GSVTD 471
            |||:||||.:||||||.||||.|||:||||:|:|.||:|  ||..:|..:.|:  .|.| |..| 
  Rat   353 HFPQGGHLLSFLSCLENGLLPRGQLEPPLWTQQGKGKVF--PKLRKRSSIRSIDAEELGVGRAT- 414

  Fly   472 ETPIDYVFRVV-SKCQHEEFLASHPILELGRS----------------------------SPRRK 507
                |||||:: ...:||....::..|...|:                            :|.:.
  Rat   415 ----DYVFRIIYPGHRHEHITINYHHLAASRAASVDDDEEEEDKLHAMLSMICSRNLTAPNPMKD 475

  Fly   508 -----------------HLGSCSTTGSS--DC-SSKSLSIDQSSCE-TPLIQASQSTSIELVCST 551
                             ||....:.|||  .| ||.|.....|.|. ||     ....:.|:|.:
  Rat   476 AGDMIEMQGFGPSLTAWHLEPLCSQGSSCLSCPSSSSPYAPPSHCSCTP-----DRLPLRLLCES 535

  Fly   552 MRRQIISRAFYGWLAYCRHLSTVRTHLSGLVNGRIMPDLAADEE-----GLTRGKWLAMHEDGVV 611
            |:|||:||||||||||||||||||||||.||:..|:|   .|..     |||:..|....:|...
  Rat   536 MKRQIVSRAFYGWLAYCRHLSTVRTHLSALVHHNIIP---PDRPPGASGGLTKDVWSKYQKDKKN 597

  Fly   612 TGDLELYRLVYFGGVEPELRKEVWPYLLGHYDFGSTPEERKKQDETCKHYYETTMSEWLAVEAIV 676
            ..:|||.|.||:||||.|:||:|||:|||||.||.:.:|.::.|......|:..::||.|.|.:|
  Rat   598 YKELELLRQVYYGGVEHEIRKDVWPFLLGHYKFGMSKKEMEQVDAAVAARYQQVLAEWKACEVVV 662

  Fly   677 RQREKEKTALAVAKLSAEQARLAANATSSSNPH-QKLANGSQQLQLEHGNGEEDQENLVLDEGEN 740
            ||||:|.....:.|.|         :.||.:.| |:|.:....:                   .|
  Rat   663 RQREREAHPATLTKFS---------SGSSIDSHVQRLVHRDSTI-------------------SN 699

  Fly   741 DVFDDNDFSDISDPGDLFDEPELGQEAEEQEQSNLEEEVFEKQEDEEDQEDHDQREM------PR 799
            |||...|  |:..||                           .:|.||.:...:||.      ..
  Rat   700 DVFISVD--DLEPPG---------------------------PQDPEDSKPKQEREPGAGTPGTA 735

  Fly   800 LSEKLVLEFQNIDNMEPLRLQENCFADSETENDLGLGLDSSGNILMLS-IKSSPSTSSYETVGNE 863
            .:|:..:||::.|:                      ||.||.|..:.| |:||            
  Rat   736 AAEQQSVEFESPDS----------------------GLPSSRNYSVASGIQSS------------ 766

  Fly   864 FLDMAEAKLEEEEPPGQLSKFHSADDVRLDNQDEEESSQPATAVIITEAASLDALDDDPTEEFTS 928
             ||.|::...||:..|                 ||.|.:|||      ||.......||.:|   
  Rat   767 -LDEAQSVGFEEDGAG-----------------EEGSEEPAT------AAHTFLGPHDPDQE--- 804

  Fly   929 RKTSLMSPLNEDITVVASLDALQEPKSACVSPASSNGGVYSVELLEQFGLNLHRIEKDVQRCDRN 993
                .::|.:|       |:..:|..:.|.:       .|::|||:...||||||:|||||||||
  Rat   805 ----KLAPASE-------LEGGEELTAVCAA-------TYTIELLDTVALNLHRIDKDVQRCDRN 851

  Fly   994 YWYFANENLDKLRNVISTYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFCKLMERMIENFP 1058
            ||||...||::||:::.:|||||||:||:||||||:||||||.|::.|:||||..||:||.:|||
  Rat   852 YWYFTTPNLERLRDIMCSYVWEHLDMGYVQGMCDLLAPLLVILDNDQLAYSCFSHLMKRMSQNFP 916

  Fly  1059 SGGAMDMHFANMRSLIQILDSEMYDLMDSNGDYTHFYFCYRWFLLDFKRELVYDDVFATWEVIWA 1123
            :|||||.|||||||||||||||:::||..||||||||||||||||||||||:|::|||.||||||
  Rat   917 NGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWFLLDFKRELLYEEVFAVWEVIWA 981

  Fly  1124 AKHIASGHFVLFLALALLETYRDIILSNSMDFTDVIKFFNEMAERHNAQSILQLSRSLVLQLQTI 1188
            |:||:|.|||||:||||:|.||:||..|:|||||:||||||.||||:||.||:::|.||.::|.:
  Rat   982 ARHISSEHFVLFIALALVEAYREIIRDNNMDFTDIIKFFNERAERHDAQEILRIARDLVHKVQML 1046

  Fly  1189 IENK 1192
            |:||
  Rat  1047 IDNK 1050

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1695NP_728346.2 RUN 63..237 CDD:280855 69/174 (40%)
PH_RUTBC 310..485 CDD:275431 103/178 (58%)
SRP68-RBD <648..>713 CDD:304552 19/65 (29%)
TBC 947..1124 CDD:214540 117/176 (66%)
Sgsm2XP_006246802.1 RUN 42..189 CDD:280855 69/174 (40%)
PH_RUTBC 256..424 CDD:275431 103/177 (58%)
TBC <838..1006 CDD:214540 125/167 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 297 1.000 Domainoid score I1402
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48923
OrthoDB 1 1.010 - - D171826at2759
OrthoFinder 1 1.000 - - FOG0002045
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_103962
Panther 1 1.100 - - O PTHR22957
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1347
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.830

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