DRSC/TRiP Functional Genomics Resources

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Protein Alignment HERC2 and ATS1

DIOPT Version :9

Sequence 1:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster
Sequence 2:NP_009382.2 Gene:ATS1 / 851213 SGDID:S000000018 Length:333 Species:Saccharomyces cerevisiae


Alignment Length:338 Identity:75/338 - (22%)
Similarity:113/338 - (33%) Gaps:100/338 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  4157 VYAWGEGEDGKLGHGNRMSYDRP-KLVEHLNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRL 4220
            |||:|.....:||.|:....|.| :.|...:|..|..||||..||..:|..|:::..|..|.|.|
Yeast     4 VYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGCGDNRRGEL 68

  Fly  4221 GHGDSEDQL---RPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDY----------- 4271
            ....:..|:   ||..|.|    ..:|:|||..  .|:.:..|..||..|.|.|           
Yeast    69 DSAQALRQVHDWRPVEVPA----PVVDVACGWD--TTVIVDADGRVWQRGGGCYEFTQQHVPLNS 127

  Fly  4272 --------------------GKLGRGGSDGCKL----------PYKIESLAGLGVVKVECGSQFS 4306
                                ...|.|.:..|:|          |..:.....:.|..|..|..|.
Yeast   128 NDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSVAVDYVAMGKDFM 192

  Fly  4307 VALTKSG-------------------------------AVYTWGK--GDFHRLGHGSVDHVRRPK 4338
            |.:.:.|                               :::.|..  ......|.|:...:...:
Yeast   193 VIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLNTVESFGRGTHSQLFPQE 257

  Fly  4339 KVAALQGKKIISIATGSLHCVACSDSGE-------VYTWGDNDEGQLG--DGTVTAIQRPRLVAA 4394
            ::    ...|:.:||||.|.:..:.:.|       ||.||..:.|..|  .|:...:|   ||..
Yeast   258 RL----DFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNCGPQKGSQPGLQ---LVGQ 315

  Fly  4395 LQGKHIVKVTCGS 4407
            ..||..|...|.:
Yeast   316 YSGKPRVFGGCAT 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HERC2NP_608388.2 RCC1 638..683 CDD:278826
RCC1 687..737 CDD:278826
RCC1 740..787 CDD:278826
RCC1 790..841 CDD:278826
RCC1_2 828..857 CDD:290274
Cyt-b5 1290..1363 CDD:278597
MIB_HERC2 1928..1987 CDD:284184
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:288381
APC10-HERC2 2762..2932 CDD:176485
RCC1 3037..3088 CDD:278826
RCC1 3091..3140 CDD:278826
RCC1 3144..3194 CDD:278826
RCC1 3197..3246 CDD:278826
RCC1 3250..3298 CDD:278826
RCC1 3302..3350 CDD:278826
RCC1_2 4136..4166 CDD:290274 4/8 (50%)
RCC1 4154..4203 CDD:278826 18/46 (39%)
RCC1 4206..4257 CDD:278826 15/53 (28%)
RCC1 4260..4309 CDD:278826 16/89 (18%)
RCC1 4312..4360 CDD:278826 10/80 (13%)
RCC1 4364..4413 CDD:278826 15/53 (28%)
HECTc 4509..4880 CDD:238033
HECTc 4553..4878 CDD:214523
ATS1NP_009382.2 ATS1 1..333 CDD:227511 75/338 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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