DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HERC2 and PRAF1

DIOPT Version :9

Sequence 1:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster
Sequence 2:NP_565144.1 Gene:PRAF1 / 844030 AraportID:AT1G76950 Length:1103 Species:Arabidopsis thaliana


Alignment Length:730 Identity:191/730 - (26%)
Similarity:307/730 - (42%) Gaps:155/730 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  3943 LEVRKKFAEMLPSSSSNSNANPGCQSPGASMLNSTTSLSSSTVSNVSPPPGITGEQPDLHCHAHQ 4007
            ::..::.....||||| ::|:.|..|||             |..|:.|.......:|        
plant   143 VDASRELTSSSPSSSS-ASASRGHSSPG-------------TPFNIDPITSPKSAEP-------- 185

  Fly  4008 LESTSTLLHEDHTLFQAPHDAQLLQWLNRRPDDWALSWGGAST----------------IYGWGH 4056
             |...|...:.|...    |.:.:|......|.:.:|...|.:                :|.||.
plant   186 -EVPPTDSEKSHVAL----DNKNMQTKVSGSDGFRVSVSSAQSSSSHGSAADDSDALGDVYIWGE 245

  Fly  4057 ---NHRGQLG-GLEGSRIKT------PTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGYGSG 4111
               ::..::| ....|.:.|      |.|.|:..:|...|:|.|.:....||..|::|..|..||
plant   246 VICDNVVKVGIDKNASYLTTRTDVLVPKPLESNIVLDVHQIACGVRHAAFVTRQGEIFTWGEESG 310

  Fly  4112 GRLGVG-GSDSWAIPTLLGSLQHVFVKKVAVNS------GGKHCLALTTEGEVYAWGEGED--GK 4167
            ||||.| |.|.:. |.|:.||       .|.:|      |..|..|:|..||:|.||:|..  |.
plant   311 GRLGHGIGKDVFH-PRLVESL-------TATSSVDFVACGEFHTCAVTLAGELYTWGDGTHNVGL 367

  Fly  4168 LGHGNRMSYDRPK-LVEHLNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRLGHGDSEDQLRP 4231
            ||||:.:|:..|| :...|.|:.||.::||..|:|.||:.|.:.|:|.|.:|.|||||.|....|
plant   368 LGHGSDISHWIPKRIAGSLEGLHVASVSCGPWHTALITSYGRLFTFGDGTFGVLGHGDKETVQYP 432

  Fly  4232 KLVEALLGYRAIDIACG---SGDAQTLCITDDDN-------VWSWGDGDYGKLGRGGSDGCKLPY 4286
            :.||:|.|.|.|.::||   :.....:.:|..::       :::|||||..:||.|..|....|.
plant   433 REVESLSGLRTIAVSCGVWHTAAVVEIIVTQSNSSSVSSGKLFTWGDGDKNRLGHGDKDPRLKPT 497

  Fly  4287 KIESLAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRRPKKVAALQGKKIIS- 4350
            .:.:|......|:.||...:|.||.||.|:|.|...:.:||:...|     .|:..|...|:.| 
plant   498 CVPALIDYNFHKIACGHSLTVGLTTSGQVFTMGSTVYGQLGNLQTD-----GKLPCLVEDKLASE 557

  Fly  4351 ----IATGSLHCVACSDSGEVYTWGDNDEGQLGDGTVTAIQRPRLVAALQGKHIVKVTCGSAHTL 4411
                |:.|:.|..|.:...||||||....|:||.|.:...:.|.:|.||:.:|:..:.|||.:|.
plant   558 FVEEISCGAYHVAALTSRNEVYTWGKGANGRLGHGDLEDRKVPTIVEALKDRHVKYIACGSNYTA 622

  Fly  4412 AL---------STSQLSERLRPLPNPPLEYDLVRDLAPEALHARLILLHHFSELVCPCLAMLPIS 4467
            |:         ..||.|       ...|.:...|. .....:..|:..|..|.......|:.|.:
plant   623 AICLHKWVSGAEQSQCS-------TCRLAFGFTRK-RHNCYNCGLVHCHSCSSKKAFRAALAPSA 679

  Fly  4468 GDLSLGALKDVLVYNIKEAAFRKVIQTTMVRD--KQHGPVIEL---NRIQVKRSRNRCN--GLAG 4525
            |.|          |.:.::.:.|:.:.:.:.|  :::..|..|   ||.::.:|..|..  |.:.
plant   680 GRL----------YRVCDSCYVKLSKVSEINDTNRRNSAVPRLSGENRDRLDKSEIRLAKFGTSN 734

  Fly  4526 IDGMKSVFGQMVQKLPLLTQEALALPHRVWKVKFVGESVDDCGGGYSE---SIAEMCDELQNG-- 4585
            :|.:|.:..:..::                     |:..|....|.:.   |:.::.|.:|:.  
plant   735 MDLIKQLDSKAAKQ---------------------GKKTDTFSLGRNSQLPSLLQLKDAVQSNIG 778

  Fly  4586 ----SVPLLINTPNG 4596
                :.|.|...|:|
plant   779 DMRRATPKLAQAPSG 793

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HERC2NP_608388.2 RCC1 638..683 CDD:278826
RCC1 687..737 CDD:278826
RCC1 740..787 CDD:278826
RCC1 790..841 CDD:278826
RCC1_2 828..857 CDD:290274
Cyt-b5 1290..1363 CDD:278597
MIB_HERC2 1928..1987 CDD:284184
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:288381
APC10-HERC2 2762..2932 CDD:176485
RCC1 3037..3088 CDD:278826
RCC1 3091..3140 CDD:278826
RCC1 3144..3194 CDD:278826
RCC1 3197..3246 CDD:278826
RCC1 3250..3298 CDD:278826
RCC1 3302..3350 CDD:278826
RCC1_2 4136..4166 CDD:290274 12/37 (32%)
RCC1 4154..4203 CDD:278826 22/51 (43%)
RCC1 4206..4257 CDD:278826 20/53 (38%)
RCC1 4260..4309 CDD:278826 15/55 (27%)
RCC1 4312..4360 CDD:278826 15/52 (29%)
RCC1 4364..4413 CDD:278826 19/48 (40%)
HECTc 4509..4880 CDD:238033 17/99 (17%)
HECTc 4553..4878 CDD:214523 10/53 (19%)
PRAF1NP_565144.1 PH_PLC_plant-like 14..124 CDD:270171
ATS1 238..628 CDD:227511 135/402 (34%)
FYVE 627..695 CDD:214499 14/85 (16%)
COG1340 <828..909 CDD:224259
BRX_N 879..>908 CDD:404581
BRX 1022..1077 CDD:400608
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm3500
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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