DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HERC2 and RUG1

DIOPT Version :9

Sequence 1:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster
Sequence 2:NP_680156.2 Gene:RUG1 / 830771 AraportID:AT5G08710 Length:434 Species:Arabidopsis thaliana


Alignment Length:408 Identity:125/408 - (30%)
Similarity:189/408 - (46%) Gaps:53/408 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly  4041 WALSWGGASTIYGWGHNHRGQ--LGGLEGSRIKTPTPCEALSLLRPVQLA-GGEQSLFAVTPDGK 4102
            |..|..|......||....|:  ||.|:..  .||..|.|||......:| ||..:|| :|...:
plant    41 WVSSESGKRFAAMWGSGDYGRLGLGNLDSQ--WTPAVCSALSDHSITAVACGGAHTLF-LTETRR 102

  Fly  4103 LFATGYGSGGRLGVGGSDSWAI-PTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDG 4166
            :||||....|:|||....|.|: |..:..|....:.   :::|..|..|:|.:||:|.||:...|
plant   103 VFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILH---ISAGYYHSAAITVDGELYMWGKNSSG 164

  Fly  4167 KLGHGNRMS--YDRPKLVEHLNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRLGHGD----- 4224
            :||.|.:.:  ...|..||.|:|:::..:|.||.||.|:|..|.||:||.|..||||||.     
plant   165 QLGLGKKAARVVRVPTKVEALHGITIQSVALGSEHSVAVTDGGEVLSWGGGGSGRLGHGHQSSLF 229

  Fly  4225 ----SEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGG------- 4278
                |..:..|:|::.|.|.:..::|.|.  ..:.|..::.:.:.:|:....|:|.||       
plant   230 GILRSNSEFTPRLIKELEGIKVTNVAAGL--LHSACTDENGSAFMFGEKSINKMGFGGVRNATTP 292

  Fly  4279 SDGCKLPYKIESLAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRRPKKVAAL 4343
            |...::||..|         |.||...:..:|:.|.:||||..:...||..|......|.:|...
plant   293 SIISEVPYAEE---------VACGGYHTCVVTRGGELYTWGSNENGCLGTDSTYVSHSPVRVEGP 348

  Fly  4344 QGKKIIS-IATGSLHCVACSDSGEVYTW------------GDNDEGQLGDGTVTAIQRPRLVAAL 4395
            ..:..:| ::.|..|..|.||: .|:||            |.:..||||.|:.....||.:|...
plant   349 FLESTVSQVSCGWKHTAAISDN-NVFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYARPAMVDLG 412

  Fly  4396 QGKHIVKVTCGSAHTLAL 4413
            :....|.::||..||.|:
plant   413 KNVRAVHISCGFNHTAAV 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HERC2NP_608388.2 RCC1 638..683 CDD:278826
RCC1 687..737 CDD:278826
RCC1 740..787 CDD:278826
RCC1 790..841 CDD:278826
RCC1_2 828..857 CDD:290274
Cyt-b5 1290..1363 CDD:278597
MIB_HERC2 1928..1987 CDD:284184
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:288381
APC10-HERC2 2762..2932 CDD:176485
RCC1 3037..3088 CDD:278826
RCC1 3091..3140 CDD:278826
RCC1 3144..3194 CDD:278826
RCC1 3197..3246 CDD:278826
RCC1 3250..3298 CDD:278826
RCC1 3302..3350 CDD:278826
RCC1_2 4136..4166 CDD:290274 9/29 (31%)
RCC1 4154..4203 CDD:278826 19/50 (38%)
RCC1 4206..4257 CDD:278826 19/59 (32%)
RCC1 4260..4309 CDD:278826 12/55 (22%)
RCC1 4312..4360 CDD:278826 13/48 (27%)
RCC1 4364..4413 CDD:278826 17/60 (28%)
HECTc 4509..4880 CDD:238033
HECTc 4553..4878 CDD:214523
RUG1NP_680156.2 RCC1 54..97 CDD:395335 17/45 (38%)
ATS1 93..432 CDD:227511 107/354 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.