Protein Alignment HERC2 and AT3G53830

DIOPT Version :9

• Sequence 1: NP_608388.2
• Gene: HERC2 / 33035
• FlyBaseID: FBgn0031107
• Length: 4912
• Species: Drosophila melanogaster
• Sequence 2: NP_001327553.1
• Gene: AT3G53830 / 824550
• AraportID: AT3G53830
• Length: 500
• Species: Arabidopsis thaliana
• Alignment Length: 508
• Identity: 119/508 - (23%)
• Similarity: 185/508 - (36%)
• Gaps: 158/508 - (31%)

  Fly  3896 SSSSSAAPGAISSTGDVHKWAWFKRYCIAVRVAQSLIRRTELPRAFCLEVRKKFAEMLPS----- 3955
            :||..|....::.||:...|.|                                .|.:||
plant   110 ASSGWAHCAVVTETGEAFTWGW--------------------------------KECIPSKDPVG 142

  Fly  3956 ---SSSNSNANPGCQSPGASMLNSTTSLSSSTVSNVSPPPGITGEQPDLHCHAHQLESTSTLLHE 4017
               |.|:...:.|....|.|::.....:...|.|.|...|...|.         ...|.:||.:|
plant   143 KQQSGSSEQGDIGWDIFGCSVVIFLLLMDMVTFSIVIVSPASQGS---------NAASGTTLQNE 198

  Fly  4018 DHTLFQAPHDAQLLQWLNRRPDDWALSWGGASTIYGWGHNHRGQLGGLEGSRIKTPTPCEALSLL 4082
                             |::..:.::.....||.......|
plant   199 -----------------NQKVGEESVKRRRVSTAKDETEGH------------------------ 222

  Fly  4083 RPVQLAGGEQSLFAVTPDGKLFATGYGSGGRLGVGGSDSWAIPTLLGSLQHVFVKKVAVNSGGKH 4147
                .:||:  .||.||  .|.:.|.|                          |:..:|.:||:|
plant   223 ----TSGGD--FFATTP--SLVSVGLG--------------------------VRITSVATGGRH 253

  Fly  4148 CLALTTEGEVYAWGEGEDGKLGHGNRMS-YDRPKLVEHLN------------------------- 4186
            .|||:..|:::.||.|.:|:||.|:|:. ...|.|:..|.
plant   254 TLALSDLGQIWGWGYGGEGQLGLGSRIKMVSSPHLIPCLESIGSGKERSFILHQGGTTTTSAQAS 318

  Fly  4187 ---GMSVADIACGSAHSAAITASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIACG 4248
               |..:..|:||..||||||.:|.::|:|.|.||:.|||::.|||||..|..:...|...:|.|
plant   319 REPGQYIKAISCGGRHSAAITDAGGLITFGWGLYGQCGHGNTNDQLRPMAVSEVKSVRMESVAAG 383

  Fly  4249 SGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKLPYKI--ESLAGLGVVKVECGSQFSVALTK 4311
            ..  .|:||:.|..|:::|...:|:||.|......||..:  ::|.|.....|.||::.|..|.:
plant   384 LW--HTICISSDGKVYAFGGNQFGQLGTGTDHAEILPRLLDGQNLEGKHAKAVSCGARHSAVLAE 446

  Fly  4312 SGAVYTWGKGDFHRLGHGSVDHVRRPKKVAALQGKKIISIATGSLHCVACSDS 4364
            .|.:..||...:.:||.|..:....|.:| .|.|.::..:|.|..|.:...||
plant   447 DGQLLCWGWNKYGQLGLGDTNDRNIPTQV-QLDGCRLRKVACGWWHTLLLGDS 498

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HERC2	NP_608388.2	RCC1	638..683	CDD:278826
		RCC1	687..737	CDD:278826
		RCC1	740..787	CDD:278826
		RCC1	790..841	CDD:278826
		RCC1_2	828..857	CDD:290274
		Cyt-b5	1290..1363	CDD:278597
		MIB_HERC2	1928..1987	CDD:284184
		UBA_HERC2	2515..2559	CDD:270585
		Cul7	2624..2699	CDD:288381
		APC10-HERC2	2762..2932	CDD:176485
		RCC1	3037..3088	CDD:278826
		RCC1	3091..3140	CDD:278826
		RCC1	3144..3194	CDD:278826
		RCC1	3197..3246	CDD:278826
		RCC1	3250..3298	CDD:278826
		RCC1	3302..3350	CDD:278826
		RCC1_2	4136..4166	CDD:290274	12/29 (41%)
		RCC1	4154..4203	CDD:278826	19/77 (25%)
		RCC1	4206..4257	CDD:278826	19/50 (38%)
		RCC1	4260..4309	CDD:278826	15/50 (30%)
		RCC1	4312..4360	CDD:278826	13/47 (28%)
		RCC1	4364..4413	CDD:278826	1/1 (100%)
		HECTc	4509..4880	CDD:238033
		HECTc	4553..4878	CDD:214523
AT3G53830	NP_001327553.1	None

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5184
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1062377at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820