DRSC/TRiP Functional Genomics Resources

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Protein Alignment HERC2 and AT3G53830

DIOPT Version :10

Sequence 1:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster
Sequence 2:NP_001327553.1 Gene:AT3G53830 / 824550 AraportID:AT3G53830 Length:500 Species:Arabidopsis thaliana


Alignment Length:508 Identity:119/508 - (23%)
Similarity:185/508 - (36%) Gaps:158/508 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  3896 SSSSSAAPGAISSTGDVHKWAWFKRYCIAVRVAQSLIRRTELPRAFCLEVRKKFAEMLPS----- 3955
            :||..|....::.||:...|.|                                .|.:||     
plant   110 ASSGWAHCAVVTETGEAFTWGW--------------------------------KECIPSKDPVG 142

  Fly  3956 ---SSSNSNANPGCQSPGASMLNSTTSLSSSTVSNVSPPPGITGEQPDLHCHAHQLESTSTLLHE 4017
               |.|:...:.|....|.|::.....:...|.|.|...|...|.         ...|.:||.:|
plant   143 KQQSGSSEQGDIGWDIFGCSVVIFLLLMDMVTFSIVIVSPASQGS---------NAASGTTLQNE 198

  Fly  4018 DHTLFQAPHDAQLLQWLNRRPDDWALSWGGASTIYGWGHNHRGQLGGLEGSRIKTPTPCEALSLL 4082
                             |::..:.::.....||.......|                        
plant   199 -----------------NQKVGEESVKRRRVSTAKDETEGH------------------------ 222

  Fly  4083 RPVQLAGGEQSLFAVTPDGKLFATGYGSGGRLGVGGSDSWAIPTLLGSLQHVFVKKVAVNSGGKH 4147
                .:||:  .||.||  .|.:.|.|                          |:..:|.:||:|
plant   223 ----TSGGD--FFATTP--SLVSVGLG--------------------------VRITSVATGGRH 253

  Fly  4148 CLALTTEGEVYAWGEGEDGKLGHGNRMS-YDRPKLVEHLN------------------------- 4186
            .|||:..|:::.||.|.:|:||.|:|:. ...|.|:..|.                         
plant   254 TLALSDLGQIWGWGYGGEGQLGLGSRIKMVSSPHLIPCLESIGSGKERSFILHQGGTTTTSAQAS 318

  Fly  4187 ---GMSVADIACGSAHSAAITASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIACG 4248
               |..:..|:||..||||||.:|.::|:|.|.||:.|||::.|||||..|..:...|...:|.|
plant   319 REPGQYIKAISCGGRHSAAITDAGGLITFGWGLYGQCGHGNTNDQLRPMAVSEVKSVRMESVAAG 383

  Fly  4249 SGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKLPYKI--ESLAGLGVVKVECGSQFSVALTK 4311
            ..  .|:||:.|..|:::|...:|:||.|......||..:  ::|.|.....|.||::.|..|.:
plant   384 LW--HTICISSDGKVYAFGGNQFGQLGTGTDHAEILPRLLDGQNLEGKHAKAVSCGARHSAVLAE 446

  Fly  4312 SGAVYTWGKGDFHRLGHGSVDHVRRPKKVAALQGKKIISIATGSLHCVACSDS 4364
            .|.:..||...:.:||.|..:....|.:| .|.|.::..:|.|..|.:...||
plant   447 DGQLLCWGWNKYGQLGLGDTNDRNIPTQV-QLDGCRLRKVACGWWHTLLLGDS 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HERC2NP_608388.2 ATS1 625..>894 CDD:444065
Cyt-b5 1292..1364 CDD:459698
MIB_HERC2 1928..1988 CDD:461991
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:463286
APC10-HERC2 2762..2932 CDD:176485
ATS1 2987..3320 CDD:444065
RCC1 3302..3350 CDD:395335
ATS1 4050..4389 CDD:444065 93/346 (27%)
HECTc 4509..4880 CDD:238033
AT3G53830NP_001327553.1 ATS1 236..495 CDD:444065 82/287 (29%)
Blue background indicates that the domain is not in the aligned region.

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