DRSC/TRiP Functional Genomics Resources

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Protein Alignment HERC2 and rcbtb2

DIOPT Version :9

Sequence 1:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster
Sequence 2:XP_005173422.1 Gene:rcbtb2 / 794652 ZFINID:ZDB-GENE-071016-3 Length:527 Species:Danio rerio


Alignment Length:332 Identity:116/332 - (34%)
Similarity:167/332 - (50%) Gaps:36/332 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly  3062 PHQLPVLRQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLGHGNRTTLDKPRLVEALRAKK 3126
            |.:|.::||..|    ..|....|:.:|::.:||:.|....|.||.|:..:..:||.::.|..||
Zfish    15 PEELRLIRQACV----FGSAANEAIYVTVNDEVFALGTNCSGCLGLGDTQSTIEPRRIDILCGKK 75

  Fly  3127 IRDVACGSS-HSAAISSQGELYTWGLGEYGRLGHGDNTTQLKPKLV-TALAGRRVVQVACGSRDA 3189
            |..::.|:. |....::.||:|.||...|.:||:|.....|.|.|| |.|.|:||.:|:|||.  
Zfish    76 IISLSYGTGPHVVIATADGEVYAWGHNGYSQLGNGTTNHGLTPALVSTNLIGKRVTEVSCGSH-- 138

  Fly  3190 QTLALTEDGAVFSWGDGDFGKLGRGGSEGSDTPHEIER-LSGIGVVQIECGAQFSLALTRAGEVW 3253
            .|:|||.||.|::||..:.|::|.|.:....||..:.. |....||.|.||...|:|:...||.:
Zfish   139 HTIALTTDGEVYAWGYNNSGQVGSGSTANQPTPRRVSSCLQNKVVVNIACGQLCSMAVLDNGETY 203

  Fly  3254 TWGKGDYYRLGHGGDQHVRKPQPIGGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSG 3318
            .||.....:||.|.:.:.:.|..|..|:|..:|.||.|..|.||:||.|.||:||.|.:||.|:|
Zfish   204 GWGYNCNGQLGLGNNGNQQTPCRIAALQGINIIQVACGYAHTLALTDEGFVYSWGANSYGQLGTG 268

  Fly  3319 NTFVNKKPALVIGLDAV-FVNRVACGSSHSIA----------WGLPNASSDEEKRGP-------V 3365
            |......|.| |.:|.. .|...||.:||:.|          ||        :.||.       .
Zfish   269 NKSNQAVPTL-INMDKERMVEVAACHTSHTSAAKTQSGQVLMWG--------QCRGQAVAYPHLT 324

  Fly  3366 PFSSTRD 3372
            .|:||.|
Zfish   325 HFTSTDD 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HERC2NP_608388.2 RCC1 638..683 CDD:278826
RCC1 687..737 CDD:278826
RCC1 740..787 CDD:278826
RCC1 790..841 CDD:278826
RCC1_2 828..857 CDD:290274
Cyt-b5 1290..1363 CDD:278597
MIB_HERC2 1928..1987 CDD:284184
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:288381
APC10-HERC2 2762..2932 CDD:176485
RCC1 3037..3088 CDD:278826 7/25 (28%)
RCC1 3091..3140 CDD:278826 15/49 (31%)
RCC1 3144..3194 CDD:278826 23/50 (46%)
RCC1 3197..3246 CDD:278826 17/49 (35%)
RCC1 3250..3298 CDD:278826 17/47 (36%)
RCC1 3302..3350 CDD:278826 21/58 (36%)
RCC1_2 4136..4166 CDD:290274
RCC1 4154..4203 CDD:278826
RCC1 4206..4257 CDD:278826
RCC1 4260..4309 CDD:278826
RCC1 4312..4360 CDD:278826
RCC1 4364..4413 CDD:278826
HECTc 4509..4880 CDD:238033
HECTc 4553..4878 CDD:214523
rcbtb2XP_005173422.1 RCC1 40..89 CDD:278826 15/48 (31%)
RCC1 93..143 CDD:278826 23/51 (45%)
RCC1 146..196 CDD:278826 17/49 (35%)
RCC1 199..248 CDD:278826 17/48 (35%)
RCC1 251..299 CDD:278826 20/48 (42%)
BTB 364..460 CDD:279045
BTB 371..463 CDD:197585
SPOP_C_like 463..521 CDD:269810
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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