Sequence 1: | NP_608388.2 | Gene: | HERC2 / 33035 | FlyBaseID: | FBgn0031107 | Length: | 4912 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006248944.1 | Gene: | Smurf1 / 690516 | RGDID: | 1594738 | Length: | 757 | Species: | Rattus norvegicus |
Alignment Length: | 994 | Identity: | 219/994 - (22%) |
---|---|---|---|
Similarity: | 340/994 - (34%) | Gaps: | 329/994 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 3962 ANPGCQSPGASMLNSTTSLSSSTVSNVS----PPP----GITGEQPDLHCHAHQLESTSTL---- 4014
Fly 4015 ---LHEDHTLFQAPHDAQLLQWLNRRPDDWALSWGGASTIYGWGHN--HRGQLGGLEG------- 4067
Fly 4068 --SRIKTPTPCEALSL--LRP--VQLAGGEQSLFAVTPDGKLFATGYGSGGRLGVGGSDSWAIPT 4126
Fly 4127 LLGSLQHVFVKKVAVNSG-GKHCLALTTEGEVYAWGEGEDGKLGHGN-----RMSYDRPKLVEHL 4185
Fly 4186 NGMSVADIACGSAHSAAITASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIACGSG 4250
Fly 4251 DAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKLPYKIESLAGLGVVKVECGSQFSVALTKSGAV 4315
Fly 4316 YTWGKGDFHRLGHGSVDHVRRPKKVAALQGKKIISIATGSLHC-----------VACSDSGEVYT 4369
Fly 4370 WGDNDEGQLGDGTVTAIQRPRLVAALQGKHIVKVTCGSAHTLALSTSQLSERLRP---------- 4424
Fly 4425 ---LPNPPLEYDLVRDLAPEALHARLILLHHFSELVCPCLAMLPISGDLSLGALKDVLVYNIKEA 4486
Fly 4487 AFRKVIQTTMVRDKQHGPVIELNRIQVKRSRNRCNGLAGIDGMKSVFGQMVQKLPLLTQEALALP 4551
Fly 4552 HRVWKVKFVGESVDDCGGGYSESIAEMCDELQNGSVPLL------INTPNGRGEAGANRDCFLLD 4610
Fly 4611 PTLSSVLQMNMFRFLGVLMGIAVRTGSPLSINLAEPVWRQLTGEVLRPTDLTEVDRDYVAGLLCI 4675
Fly 4676 RNMDDDPKLFTALELPFSTS-SARG----HEVPLSTRYTHISPRNRAEYVRLALGFR-LHEFDEQ 4734
Fly 4735 VKAVRDGMSKVIPVPLLSLFSAAELQAMVCGSPDIPLGLLKSVATYKGFDPSSALVTWFWEVMEE 4799
Fly 4800 FTNQERSLFLRFVWGRTRLPRTIADFRG----------RDFVLQVLEKNPPDHFLPESYTCFFLL 4854
Fly 4855 KMPRYSCKAVLLEKLKYAI 4873 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
HERC2 | NP_608388.2 | RCC1 | 638..683 | CDD:278826 | |
RCC1 | 687..737 | CDD:278826 | |||
RCC1 | 740..787 | CDD:278826 | |||
RCC1 | 790..841 | CDD:278826 | |||
RCC1_2 | 828..857 | CDD:290274 | |||
Cyt-b5 | 1290..1363 | CDD:278597 | |||
MIB_HERC2 | 1928..1987 | CDD:284184 | |||
UBA_HERC2 | 2515..2559 | CDD:270585 | |||
Cul7 | 2624..2699 | CDD:288381 | |||
APC10-HERC2 | 2762..2932 | CDD:176485 | |||
RCC1 | 3037..3088 | CDD:278826 | |||
RCC1 | 3091..3140 | CDD:278826 | |||
RCC1 | 3144..3194 | CDD:278826 | |||
RCC1 | 3197..3246 | CDD:278826 | |||
RCC1 | 3250..3298 | CDD:278826 | |||
RCC1 | 3302..3350 | CDD:278826 | |||
RCC1_2 | 4136..4166 | CDD:290274 | 9/30 (30%) | ||
RCC1 | 4154..4203 | CDD:278826 | 15/53 (28%) | ||
RCC1 | 4206..4257 | CDD:278826 | 9/50 (18%) | ||
RCC1 | 4260..4309 | CDD:278826 | 6/48 (13%) | ||
RCC1 | 4312..4360 | CDD:278826 | 8/58 (14%) | ||
RCC1 | 4364..4413 | CDD:278826 | 11/48 (23%) | ||
HECTc | 4509..4880 | CDD:238033 | 100/387 (26%) | ||
HECTc | 4553..4878 | CDD:214523 | 99/343 (29%) | ||
Smurf1 | XP_006248944.1 | C2_Smurf-like | 14..138 | CDD:176028 | 29/152 (19%) |
WW | 236..267 | CDD:197736 | 9/50 (18%) | ||
WW | 307..339 | CDD:197736 | 7/38 (18%) | ||
HECTc | 399..754 | CDD:238033 | 105/426 (25%) | ||
HECTc | 423..754 | CDD:214523 | 100/395 (25%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG5021 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |