Sequence 1: | NP_608388.2 | Gene: | HERC2 / 33035 | FlyBaseID: | FBgn0031107 | Length: | 4912 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_021334464.1 | Gene: | rpgra / 571327 | ZFINID: | ZDB-GENE-070912-423 | Length: | 1692 | Species: | Danio rerio |
Alignment Length: | 1090 | Identity: | 242/1090 - (22%) |
---|---|---|---|
Similarity: | 421/1090 - (38%) | Gaps: | 202/1090 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 3021 PIHIAGGSKSLFIVSQDGKVYACGEGTNGRLGLGVTHNVPLPHQLPVLRQYVVKKVAVHSGGKHA 3085
Fly 3086 LALTLDGKVFSWGEGEDGKLGHGN-RTTLDKPRLVEALRAKKIRDVACGSSHSAAISSQGELYTW 3149
Fly 3150 GLGEYGRLGHGDNTTQLKPKLVTALAGRRVVQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRG 3214
Fly 3215 GSE--GSDTPHEIERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVR-KPQP 3276
Fly 3277 IGGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGN-TFVNK-KPALVIGLDAVFVNR 3339
Fly 3340 VACGSSHSIAWGLPNASSDEE---KRGPVPFSSTRDPLGGSSLGIYEAETMQTLKQEAKPLN--- 3398
Fly 3399 --QSSL-SESLALETPAARQAALGHVLRAMSILQARQLIVAALTSHSKVNFKERGAV--GGEEDH 3458
Fly 3459 LIGGPIMGAPLQLAETIAQG----------GGEAPADATDAGLQEH--------SP------EAA 3499
Fly 3500 VDALTGGMSGG------ANTLP-PLSAGPLSAFQSLTGSLSMSGSLSSSALPQHKHSRMSASAMS 3557
Fly 3558 VMAATMTQQEEMLSHISHCHGLDDFGG----LLGEPEAKSLVELLK-----------LAVCGRCG 3607
Fly 3608 PPSTSQ---TIADTLISLGAGTPAVAAMLLETCITELEDLCTSRHCLGKLPKPVMQESSHPYVDN 3669
Fly 3670 VNVTGVVRI---PGAEM------------LRLEFDSQCST-EKRN-DPLVI---MDGTGRVLAMR 3714
Fly 3715 SGREFAHWAPEIRVLGDELRWKFSSDSSVNGWGWRFWVHAIMPAATLGESGSDRAVLSQPSMALV 3779
Fly 3780 MSLLDSRLAPRQPSVLLRLASALAACSQLGALTTAQRIWSLRKLHAVLLLEQAPRPQDPSLSTL- 3843
Fly 3844 -----LQPLIPELLRQYEYEEPQVRGGIHLMHSDYFKTLAALACDMQLDAALPATSSSSSSSAAP 3903
Fly 3904 -----GAISSTGDVHKWAWFKRYCIAVRVAQSLIRRTELPR------------------AFCLEV 3945
Fly 3946 RKKFAEMLPSSS-SNSNANPGC-----QSPGASMLNSTTSLSSSTVSNVS 3989 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
HERC2 | NP_608388.2 | RCC1 | 638..683 | CDD:278826 | |
RCC1 | 687..737 | CDD:278826 | |||
RCC1 | 740..787 | CDD:278826 | |||
RCC1 | 790..841 | CDD:278826 | |||
RCC1_2 | 828..857 | CDD:290274 | |||
Cyt-b5 | 1290..1363 | CDD:278597 | |||
MIB_HERC2 | 1928..1987 | CDD:284184 | |||
UBA_HERC2 | 2515..2559 | CDD:270585 | |||
Cul7 | 2624..2699 | CDD:288381 | |||
APC10-HERC2 | 2762..2932 | CDD:176485 | |||
RCC1 | 3037..3088 | CDD:278826 | 15/50 (30%) | ||
RCC1 | 3091..3140 | CDD:278826 | 13/49 (27%) | ||
RCC1 | 3144..3194 | CDD:278826 | 16/49 (33%) | ||
RCC1 | 3197..3246 | CDD:278826 | 15/50 (30%) | ||
RCC1 | 3250..3298 | CDD:278826 | 16/48 (33%) | ||
RCC1 | 3302..3350 | CDD:278826 | 19/49 (39%) | ||
RCC1_2 | 4136..4166 | CDD:290274 | |||
RCC1 | 4154..4203 | CDD:278826 | |||
RCC1 | 4206..4257 | CDD:278826 | |||
RCC1 | 4260..4309 | CDD:278826 | |||
RCC1 | 4312..4360 | CDD:278826 | |||
RCC1 | 4364..4413 | CDD:278826 | |||
HECTc | 4509..4880 | CDD:238033 | |||
HECTc | 4553..4878 | CDD:214523 | |||
rpgra | XP_021334464.1 | RCC1 | 5..43 | CDD:306840 | 4/12 (33%) |
RCC1 | <31..324 | CDD:332518 | 95/301 (32%) | ||
RCC1 | 305..352 | CDD:306840 | 17/46 (37%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1062377at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |