DRSC/TRiP Functional Genomics Resources

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Protein Alignment HERC2 and sergef

DIOPT Version :9

Sequence 1:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster
Sequence 2:XP_021329502.1 Gene:sergef / 565673 ZFINID:ZDB-GENE-061220-11 Length:397 Species:Danio rerio


Alignment Length:398 Identity:119/398 - (29%)
Similarity:180/398 - (45%) Gaps:41/398 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly  4049 STIYGWGHNHRGQLGGLEGSRIKTPTPCEALSLLRPVQL-----AGGEQSLFAVTPDGKLFATGY 4108
            |.:|.||.|..||||  :|:......|....|.|:..|:     .||..:|  ::..|:|...|.
Zfish    11 SLLYTWGANSYGQLG--QGNAEDQAEPRRVESGLQEEQIRAVTGGGGHSAL--ISDSGELLVCGQ 71

  Fly  4109 GSGGRLGVGGSDSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDGKLGHGNR 4173
            ...|:||:  ..:..|.|........|.:...|:.|....:.||.:|.|.|.|....|:||....
Zfish    72 NHKGQLGL--CHTLEIMTFQTCPLPGFGRVQQVSCGWDFTIILTGDGLVLACGSNAFGQLGGSAE 134

  Fly  4174 MSYDRPKLVEHLNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALL 4238
            .::....|:.......|..:|.|..|:.|.||||.|..||.|.     ...::..|.|:.|.:.|
Zfish   135 KTHSAEPLLLKSFHEPVTSVAAGLRHALASTASGCVYQWGTGL-----SSHAKRMLNPQPVPSHL 194

  Fly  4239 GYRAIDIACG----------SGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKLPYKIE--SL 4291
            ..:...:..|          :|.|...|:|.:.:|:.||...:|:| ..||....||..::  .|
Zfish   195 SSKEPCLVPGFAHVTTQKVIAGSAHCACLTVNGDVFLWGSNKHGQL-ISGSLFLPLPVALDRSML 258

  Fly  4292 AGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLG---HG----SVDH--VRRPKKVAALQGKK 4347
            ....|..|..|....||.|:||.|:|||:.::.:||   |.    |.|.  ||.|.:|.||.|  
Zfish   259 QDERVSDVHSGWTHLVAQTESGRVFTWGRSNYGQLGQTNHSMEKQSCDERLVRSPVEVKALFG-- 321

  Fly  4348 IISIATGSLHCVACSDSGEVYTWGDNDEGQLGDGTVTAIQRPRLVAALQGKHIVKVTCGSAHTLA 4412
            ...|:.||.|.:|.. .|.|::||.|:.|..|||::..|.:|:.:.||.....:.:.||:.|::|
Zfish   322 ATQISCGSEHNLAVV-GGRVFSWGWNEHGMCGDGSLQDITQPQPIPALADAVALLIGCGAGHSMA 385

  Fly  4413 LSTSQLSE 4420
            |.:.:.||
Zfish   386 LCSLKSSE 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HERC2NP_608388.2 RCC1 638..683 CDD:278826
RCC1 687..737 CDD:278826
RCC1 740..787 CDD:278826
RCC1 790..841 CDD:278826
RCC1_2 828..857 CDD:290274
Cyt-b5 1290..1363 CDD:278597
MIB_HERC2 1928..1987 CDD:284184
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:288381
APC10-HERC2 2762..2932 CDD:176485
RCC1 3037..3088 CDD:278826
RCC1 3091..3140 CDD:278826
RCC1 3144..3194 CDD:278826
RCC1 3197..3246 CDD:278826
RCC1 3250..3298 CDD:278826
RCC1 3302..3350 CDD:278826
RCC1_2 4136..4166 CDD:290274 8/29 (28%)
RCC1 4154..4203 CDD:278826 12/48 (25%)
RCC1 4206..4257 CDD:278826 13/60 (22%)
RCC1 4260..4309 CDD:278826 14/50 (28%)
RCC1 4312..4360 CDD:278826 22/56 (39%)
RCC1 4364..4413 CDD:278826 16/48 (33%)
HECTc 4509..4880 CDD:238033
HECTc 4553..4878 CDD:214523
sergefXP_021329502.1 RCC1 13..387 CDD:332518 115/388 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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