Sequence 1: | NP_608388.2 | Gene: | HERC2 / 33035 | FlyBaseID: | FBgn0031107 | Length: | 4912 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001102581.1 | Gene: | Wwc2 / 498630 | RGDID: | 1559427 | Length: | 1194 | Species: | Rattus norvegicus |
Alignment Length: | 1380 | Identity: | 258/1380 - (18%) |
---|---|---|---|
Similarity: | 432/1380 - (31%) | Gaps: | 480/1380 - (34%) |
- Green bases have known domain annotations that are detailed below.
Fly 1475 GKSQLQLRADAFISGLAEARVSEPPV---------AAWLALTERY--------CKAHNLMWHQEF 1522
Fly 1523 ATEHPVQELERLLSAVLIRHQYLGGLVLNALETEVPPPRQLGEIIRLVHQAKWSVVRTRQQLNRS 1587
Fly 1588 YKEVCAPILERLRFLLYEVRPAISPQQR---GLRRLPILQRPPRFKMLVRRLLQELRSSRQPAKP 1649
Fly 1650 EDLLNASI-----QQEQEKKPQSMPKQELEEQEEEETLLRRLNERQIHGEGELDPALMQDIVDFA 1709
Fly 1710 LQDSCDVETARRAMYCQMQRYQLRLAGLQIVQQLLELHGLLDAAQYSL----LNGFLGLHLKSTS 1770
Fly 1771 SG-----GGSTGSGSSLHVLGQLNMISAYQKARLLLAQSRV----LD---W-----AVRELRRLV 1818
Fly 1819 N--------------------------------QEQQGHARG----------------------- 1828
Fly 1829 KDSTNLGTYVL--LKRLPRARFLL---SVFGLLAKELGP------NELGFLINSGLLGTVLG--- 1879
Fly 1880 ----------LLAQTGGEGATGGQVHGELSILYEDSVLKQKSSKAQLSGPDLAKLMKIGTRIVRG 1934
Fly 1935 ADWKWGDQDGNPPGEGRIISEVGEDGWVRVEWYTGATNSYRMGKEGQYDLQLADSALNVASPTEP 1999
Fly 2000 EREDV----SGSEASP---TSDSHPSKLLRHCAAKLLQILAVGTGLHGAQLDKDALRGMTSMFRT 2057
Fly 2058 IIYPKPSMS-----NISYALGWLNLGFIRAISGDCPRLCLELSTPGWLSHYL----------SLL 2107
Fly 2108 EQPAGNEAGVYRQLHCLRLLQLILAQWGAEEEPRMPALVHQLFATLGRIALHCPGDASLLPTAEG 2172
Fly 2173 KARVLLTA-----------SHSGSVAEELVALLRRLH--TLPSWNPVINSFLAQKLCVAAELLAE 2224
Fly 2225 QSHSTALDSEQVFVLGVLGAMGGHDLRPRVGLH------CFHEGSHMVIASFTPKGRCLLAPGGV 2283
Fly 2284 GSGVGFVKVQLPAVMPH-----LDHTVFSLSRLPMNEMLLNAWTVLLYGPAPELRELP------- 2336
Fly 2337 ------SSADGRLDLALLRAQQLQMAVLHTNGVLYRHQVALRRILKQRAPGSIYASPDEPDRSDA 2395
Fly 2396 ESQQPGEQDQQLSSGSGQEPQLLIQCI-LLRATQASPVKACYSYMDLATAA------LNCIQSLA 2453
Fly 2454 TQAHQELSEGGGVPPNGRALSSPPQPTMVHGVPVYNVARKEQKPSEQVEQKSKWPAAATDAQLIG 2518
Fly 2519 QIMEMGFTRRTVELALKQLSLQAEIMPTPEQIVQWI--LEHPDVCANTIEEDTLPLASSASSHDP 2581
Fly 2582 EAD----------SDNECPSSNS------TTSSSTSSDTVEGQPMAVSGPAPPVKFESRKDFQTA 2630
Fly 2631 DLYALYVRGLVRPGM 2645 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
HERC2 | NP_608388.2 | RCC1 | 638..683 | CDD:278826 | |
RCC1 | 687..737 | CDD:278826 | |||
RCC1 | 740..787 | CDD:278826 | |||
RCC1 | 790..841 | CDD:278826 | |||
RCC1_2 | 828..857 | CDD:290274 | |||
Cyt-b5 | 1290..1363 | CDD:278597 | |||
MIB_HERC2 | 1928..1987 | CDD:284184 | 7/58 (12%) | ||
UBA_HERC2 | 2515..2559 | CDD:270585 | 8/45 (18%) | ||
Cul7 | 2624..2699 | CDD:288381 | 6/22 (27%) | ||
APC10-HERC2 | 2762..2932 | CDD:176485 | |||
RCC1 | 3037..3088 | CDD:278826 | |||
RCC1 | 3091..3140 | CDD:278826 | |||
RCC1 | 3144..3194 | CDD:278826 | |||
RCC1 | 3197..3246 | CDD:278826 | |||
RCC1 | 3250..3298 | CDD:278826 | |||
RCC1 | 3302..3350 | CDD:278826 | |||
RCC1_2 | 4136..4166 | CDD:290274 | |||
RCC1 | 4154..4203 | CDD:278826 | |||
RCC1 | 4206..4257 | CDD:278826 | |||
RCC1 | 4260..4309 | CDD:278826 | |||
RCC1 | 4312..4360 | CDD:278826 | |||
RCC1 | 4364..4413 | CDD:278826 | |||
HECTc | 4509..4880 | CDD:238033 | |||
HECTc | 4553..4878 | CDD:214523 | |||
Wwc2 | NP_001102581.1 | WW | 12..41 | CDD:278809 | 7/33 (21%) |
WW | 59..88 | CDD:278809 | 8/43 (19%) | ||
DUF342 | <283..385 | CDD:302792 | 14/101 (14%) | ||
YlqD | 351..>420 | CDD:287979 | 5/68 (7%) | ||
C2_Kibra | 699..822 | CDD:176062 | 30/167 (18%) | ||
Phage_Nu1 | <1095..>1153 | CDD:294991 | 8/31 (26%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG5021 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |