DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HERC2 and CG5087

DIOPT Version :10

Sequence 1:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster
Sequence 2:NP_648279.1 Gene:CG5087 / 39035 FlyBaseID:FBgn0035953 Length:1078 Species:Drosophila melanogaster


Alignment Length:615 Identity:143/615 - (23%)
Similarity:218/615 - (35%) Gaps:191/615 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  4357 HCVACSDSGEVYTWGDNDEGQLGD----------------------GTVTAIQRPRLVAALQGKH 4399
            |.|...|..|:||  :.:..:|.|                      |....:|.|..:       
  Fly   548 HYVTILDEHEMYT--EQNPFKLNDYVLLTYFLNNILYKLINDNLLAGAKNIVQHPVFL------- 603

  Fly  4400 IVKVTCGSAHTLALSTSQLSERLRPLPNPPLEY--------DLVRDLAPEALHARLILLHHFSEL 4456
                   |.|||.|...:...| ||. .||..:        ..:.||.....:|.|:        
  Fly   604 -------SLHTLMLCLYRRDCR-RPF-TPPKHWLIPEVKPSTFINDLEKAKRNAMLL-------- 651

  Fly  4457 VCPCLAMLPISGDLSLGALKDVLVYNIKEAAFRKVIQTTMVRDKQHGPVIELNRIQVKRSRNRCN 4521
                ||.:|           .::.:..:...|||.:|..                          
  Fly   652 ----LAKMP-----------HIIPHEDRVKLFRKFVQNE-------------------------- 675

  Fly  4522 GLAGIDGMKSVFGQMVQKLPLLTQEALALPHRVWKVKFVGESVDDCGGGYSESIAEMCDELQNGS 4586
                    |:|.|        ||:.|.|.|.....|......|:|   ||.:..|:....|: |.
  Fly   676 --------KAVMG--------LTESACASPRSALIVIHRDRIVED---GYRQLAAQPTQALK-GV 720

  Fly  4587 VPLLINTPNGRGEAGANRDC----FL-------LDPTLS---------------SVLQMN---MF 4622
            :.:......|..|||.::|.    ||       .||:|:               |.:|.|   :|
  Fly   721 IRVRFINQQGLHEAGIDQDGVFKEFLEETIKKVFDPSLNLFKTTSDQRLYPSPISYVQDNHLELF 785

  Fly  4623 RFLGVLMGIAVRTGSPLSINLAEPVWRQLTGEVLRP-----TDLTEVDRDYVAGLLCIRNMDDDP 4682
            .|:|.::|.||..|..:.:..|.....||.|:..:.     .:|..:|.:....|..|::...| 
  Fly   786 EFVGRMLGKAVYEGIVVDVPFASFFLSQLLGQTQQALYSCMDELPSLDNELYRSLTFIKHYKQD- 849

  Fly  4683 KLFTALELPFST-SSARGHEVPLST----RYTHISPRNRAEYVRLALGFRLH-EFDEQVKAVRDG 4741
              .:.|.|.||. ....|..|.|:.    :...::..|:..|:.....|.:: :..||..|...|
  Fly   850 --VSDLNLTFSVDQDVMGKIVTLALHPGGKARVVNDHNKLVYIHYMAFFHMNTQIREQTIAFNRG 912

  Fly  4742 MSKVIPVPLLSLFSAAELQAMVCGSPDIPL---GLLKSVATYKGFDPSSALVTWFWEVM-EEFTN 4802
            ...::....|||||..|||.::.|... ||   .|.|....|.||..:..:|.|.|::: ::||.
  Fly   913 FRSIVNPEWLSLFSPPELQRLISGDTS-PLDLKDLQKHTHYYGGFHDTHQVVCWLWDILAKDFTE 976

  Fly  4803 QERSLFLRFVWGRTRLP---------------------RTIADFRG---RDFVLQVLEKNPPDHF 4843
            :||.|||:||...::.|                     ....|..|   |.|.  .:.|..|.:.
  Fly   977 EERKLFLKFVTSCSKPPLLGFAHLEPPFSIRCVEVSDDEDTGDTIGSVIRGFF--AIRKKDPLNR 1039

  Fly  4844 LPESYTCFFLLKMPRYSCKAVLLEKLKYAI 4873
            ||.|.|||.|||:|.|..|:.|.:||:||:
  Fly  1040 LPTSSTCFNLLKLPNYQKKSTLRDKLRYAV 1069

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HERC2NP_608388.2 ATS1 625..>894 CDD:444065
Cyt-b5 1292..1364 CDD:459698
MIB_HERC2 1928..1988 CDD:461991
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:463286
APC10-HERC2 2762..2932 CDD:176485
ATS1 2987..3320 CDD:444065
RCC1 3302..3350 CDD:395335
ATS1 4050..4389 CDD:444065 10/53 (19%)
HECTc 4509..4880 CDD:238033 111/433 (26%)
CG5087NP_648279.1 IQCD 20..50 CDD:467745
HECTc 694..1076 CDD:238033 103/386 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.