DRSC/TRiP Functional Genomics Resources

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Protein Alignment HERC2 and Ube3c

DIOPT Version :9

Sequence 1:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster
Sequence 2:XP_038964472.1 Gene:Ube3c / 362294 RGDID:1559986 Length:1083 Species:Rattus norvegicus


Alignment Length:684 Identity:144/684 - (21%)
Similarity:244/684 - (35%) Gaps:238/684 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  4284 LPYKIESL---------AGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRRPKK 4339
            :|:.:|.|         |.||::|:               .|...|.:.            |.:.
  Rat   535 MPFTLEELILLSRCLRDACLGIIKL---------------AYPETKPEV------------REEY 572

  Fly  4340 VAALQGKKIISIATGS--LHCVACSDSGEVYTWGDNDEGQLGDGTVTAIQRPRLVAALQGKHIVK 4402
            |:|.|.   |.:.|.|  .||:.......|..:          ..:|     .||..|:.:...:
  Rat   573 VSAFQS---IGVTTNSEMQHCIQMEQKRWVQLF----------KVIT-----NLVKMLKSRDTRR 619

  Fly  4403 VTCGSAHTLA----LSTSQLSE----------------RLRP--------LPNPPLEYDLVRDLA 4439
            ..|...|.|:    :...::::                |:.|        |.:|||.....|.| 
  Rat   620 NFCPPNHWLSEQEDIKADKVTQLYVPASRHVWRFRRMGRIGPLQSTLEVGLESPPLSVSEERQL- 683

  Fly  4440 PEALHARLILLHHFSELVCPCLAMLPISGDLSLGALKDVLVYNIKEAAFRKVIQTTMVRDKQH-- 4502
              |:...|..:..|.|.|                                |:.|..:..|||.  
  Rat   684 --AILTELPFVVPFEERV--------------------------------KIFQRLIYADKQEVQ 714

  Fly  4503 --GPVIELNRIQVKRSRNRCNGLAGIDGMKSVFGQMVQKLPLLTQEALALPHRVWKVKFVG--ES 4563
              ||.::...:.::|:              .::.....||....:..|....||..:...|  |:
  Rat   715 GDGPFLDGINVTIRRN--------------YIYEDAYDKLSPENEPDLKKRIRVHLLNAHGLDEA 765

  Fly  4564 VDDCGGGYSESIAEMCDELQNGSVP-----------LLINTPNGR---GEAGANRDCFLLDPTLS 4614
            ..|.||.:.|.:.|:   |::|..|           ||...|..:   |::.| |..:.|...|.
  Rat   766 GIDGGGIFREFLNEL---LKSGFNPNQGFFKTTNEGLLYPNPAAQMLVGDSFA-RHYYFLGRMLG 826

  Fly  4615 SVLQMNM---FRFLGVLMGIAVRTGSPLSINLAEPVWRQLTGEVLRPTDLTEVDRDYVAGLLCIR 4676
            ..|..||   ..|.|..:...:.|.:.:.|:                 .|..:|.:....||.::
  Rat   827 KALYENMLVELPFAGFFLSKLLGTSADVDIH-----------------HLASLDPEVYKNLLFLK 874

  Fly  4677 NMDDDPK----LFT----------ALELPFSTSSARGHEVPLSTRYTHISPRNRAEYVRLALGFR 4727
            :.::|.:    .||          .:||.|.     |.::|       ::..||..|:.|...:|
  Rat   875 SYEEDVEELGLNFTVVNNDLGEAQVVELKFG-----GKDIP-------VTGANRIAYIHLVADYR 927

  Fly  4728 LHEFDEQVK----AVRDGMSKVIPVPLLSLFSAAELQAMVCGSPDIPLGL--LKSVATYK-GFDP 4785
            |   ::|::    |.|.|::.|:.:..|.:|...|:|.::.|: .:|:.|  |||...|. |:..
  Rat   928 L---NKQIRPHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGA-QVPVSLEDLKSFTNYSGGYSA 988

  Fly  4786 SSALVTWFWEVMEEFTNQERSLFLRFVWGRTRLPRTIADFR-----------GRDFVLQVLEKNP 4839
            ...::..||.|:|.||::|:...|:||...:|.|  :..|:           |.|     ||:  
  Rat   989 DHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPP--LLGFKELYPAFCIHNGGSD-----LER-- 1044

  Fly  4840 PDHFLPESYTCFFLLKMPRYSCKAVLLEKLKYAI 4873
                ||.:.||..|||:|.:..:|:|..||.|||
  Rat  1045 ----LPTASTCMNLLKLPEFYDEALLRSKLLYAI 1074

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HERC2NP_608388.2 RCC1 638..683 CDD:278826
RCC1 687..737 CDD:278826
RCC1 740..787 CDD:278826
RCC1 790..841 CDD:278826
RCC1_2 828..857 CDD:290274
Cyt-b5 1290..1363 CDD:278597
MIB_HERC2 1928..1987 CDD:284184
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:288381
APC10-HERC2 2762..2932 CDD:176485
RCC1 3037..3088 CDD:278826
RCC1 3091..3140 CDD:278826
RCC1 3144..3194 CDD:278826
RCC1 3197..3246 CDD:278826
RCC1 3250..3298 CDD:278826
RCC1 3302..3350 CDD:278826
RCC1_2 4136..4166 CDD:290274
RCC1 4154..4203 CDD:278826
RCC1 4206..4257 CDD:278826
RCC1 4260..4309 CDD:278826 7/33 (21%)
RCC1 4312..4360 CDD:278826 11/49 (22%)
RCC1 4364..4413 CDD:278826 8/52 (15%)
HECTc 4509..4880 CDD:238033 98/416 (24%)
HECTc 4553..4878 CDD:214523 94/372 (25%)
Ube3cXP_038964472.1 IQ 47..64 CDD:197470
HECTc 725..1081 CDD:238033 98/414 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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