Sequence 1: | NP_608388.2 | Gene: | HERC2 / 33035 | FlyBaseID: | FBgn0031107 | Length: | 4912 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_609369.1 | Gene: | Ufd4 / 34378 | FlyBaseID: | FBgn0032208 | Length: | 2727 | Species: | Drosophila melanogaster |
Alignment Length: | 2756 | Identity: | 519/2756 - (18%) |
---|---|---|---|
Similarity: | 850/2756 - (30%) | Gaps: | 1033/2756 - (37%) |
- Green bases have known domain annotations that are detailed below.
Fly 709 SLPTLVVALSDHMVVDVALGSGDAHSLA----------LTSE-GLVFAWGDGDYGKLGNGNCNGS 762
Fly 763 LQPILVESLPRVQRVFAGSQ-----FSVALSSEGQLYTWGKATCLGHQLVERS---VQGCSVPRL 819
Fly 820 VSSLQHKRIVDVAVS--VAHCLALSSSGEVFGWGRNDSQQICPASVSSEPLLRTPILVSLPTFPA 882
Fly 883 SGIACTSAQSLVWTQSSHQGVPRRAPFVVDLGEPTFRLLDQLLGMCSSQDNRQTPNQE--SECIA 945
Fly 946 VACLNLFRLQLLALIANGVEPRQVGLASGSRLLCSLKTRILGLAGGS-----QVLRT-IQVAAQQ 1004
Fly 1005 ALQDGWSVLLPTAAERAQTLTSLLPSEPGQASSAG-----------------------HRFMTDL 1046
Fly 1047 LVSSLMAEGGLESALQHAIRLESSSCSADCGDGVHLPL---------LQLITRLLSNNAALSQTR 1102
Fly 1103 LSPTL----------------------------GKQQ-EKEEEEREQQHQEPST---------SP 1129
Fly 1130 SLSLLHRFQRLLLSHIHQAQPEEETTGAEALLLQYMHALIPACVATLQKAHELALQCREPGENSF 1194
Fly 1195 GQMVGHLGRVLQADISDALLNELLVGLLLLKRDRPQCLGGLRWARLFLPLLRVLDRLNRALGEGE 1259
Fly 1260 LRDGDDMGWPGIICRGGPKGGPPPADPETHYVRRADMENLLLDGSRCIILAGYVCDLSGYNCESE 1324
Fly 1325 TLRSVLDS---GLGKDLTAEMSSQVHRTAMEHILEHH-KLGKY-MVQA-----STEEKSSAPGPS 1379
Fly 1380 RLTHFSSECALAQLLG---LVANLMCSGPALQPAE--LQ-----------CRQLDKSSLLSG--G 1426
Fly 1427 LQLLQPSNPF-----DEEKGEARSSHSCHSTAGNTPTELPPPLPMQQQLAPGRGKSQLQLRADAF 1486
Fly 1487 ISGLAEAR-------VSEP--PVAA--------WLALTERYCKAHNLMWHQEFATE-HPVQELER 1533
Fly 1534 LLSAVLI------RHQYLGGLVL---------------NALETE--------------------- 1556
Fly 1557 -VPPPRQLGEIIRLVHQAKWSVVRTRQQLNRSYKEVCAPILERLRFLLYE--VRPAISPQQRGL- 1617
Fly 1618 --------------------------RRLPILQR------------PPRFKMLVRRLLQELRSSR 1644
Fly 1645 QPAKPEDLLNASIQQEQEKKP-------------QSMPKQ---ELEEQEEEETLL----RRLNER 1689
Fly 1690 QIHGEGELDPALMQDIVDFALQDSCDVETARRAMYCQMQRYQLRLAGLQIVQQL-LELHGLL--- 1750
Fly 1751 ----------DAAQYSLLNGFLGLHLKSTSSGGGSTGSGSSLHVLGQ----LNMISAYQKARLLL 1801
Fly 1802 AQSRV----LDWAVRELR-----RLVNQEQQGHARGKDSTNLGTYV----LLKRLPRARFLL--- 1850
Fly 1851 ---SVF--GLLAKELGPNELG---FLINSG--LLGTVLGLLAQTG-----GEGATGGQVHGELSI 1900
Fly 1901 LYEDSVLKQKSSKAQLSGPDLAKLMKIGTRIVRGADWKWGDQDGNPPGEGRIISEVGEDGWVRVE 1965
Fly 1966 WYTGATNSYRMGKEGQYDLQLAD--------------SALNVASPTE--------------PERE 2002
Fly 2003 DVSGSEASPTSDSHPSKLLRHCAAK------------------LLQILAVGTGLHGAQLDKDALR 2049
Fly 2050 GMTSMFR-TIIYPKPSMSNISYALGWLNLGFIRAISGDCPRL----CLELSTPGWLSHYLSLLEQ 2109
Fly 2110 PAGNEAGVYRQLHCLRLLQLILAQWGAEEEPRMPALVHQLFATLGRIALH------CPGDASLLP 2168
Fly 2169 TAEGKARVLLTASHS-GSVAEELVALLRRLHTLPSWNPVINSFLAQKLCVAAELLAEQSHSTALD 2232
Fly 2233 SEQVFVLGVLGAMGGHDLRPRVGLHCFHEGSHMVIASFTPKGRCLLAP-GGVGSGVGFVKVQLPA 2296
Fly 2297 VMPHLDHTVFSLSRLPMNEMLLNAWTVLLYGPAPE----------LRELPSSADGRLDLALLRAQ 2351
Fly 2352 QLQMAVLHTNGVLYRHQVALRRILKQRAPGSIYASPDEPDRSDAESQQPGEQDQQLSSGSGQEP- 2415
Fly 2416 QLLIQCILLRATQASPVKACYSYMDLATAALNCIQSLATQAHQELSEGGGVPPNGRALSSPPQPT 2480
Fly 2481 MVHGVPVYNVARKEQKPSEQVEQKSKWPAAATDAQLIGQIMEMGFTRRTVELALKQLSLQAEIMP 2545
Fly 2546 TPEQIVQWILEHPDVCANTIEEDTLPLASSASSHDPEADSDNECPSSNSTTSSSTSSDTVEGQPM 2610
Fly 2611 AVSGPAPPV---------KFESRKDFQTADLYALYVRGLVRPGMTVRCCRDFEEIKQGDMGTVLI 2666
Fly 2667 -----------VDTEGLHDLNVQV----DWRNHGSTYWVCFVHIELVEAAQTHHQPRPPPIAVGA 2716
Fly 2717 RVRLRTSSLRYGMLCPLRLGRSQGSSAIGVVSSVRSKQLTVDFPDQPAWQGHINEVELVASQPTS 2781
Fly 2782 ATLPSLGDSCSQMPPSDL---IEDWS--RCIRSLTVSSNEAAAKHLLNGSNQPWQSCSSGPCRHW 2841
Fly 2842 IRLELHDRILVHSLTL---KVSPEDHSHMPSLLEIRVGDCVDSLKEYTWIP---VPAGASRVLLM 2900
Fly 2901 QQVPTYYPW----------VEVVVKQCQNNGI-------QCKIHGIK------FVGRRQQPDLQH 2942
Fly 2943 ILANAQFLAS-----------EYSAGVGPGST-----------AGAGAVSTSHEEAAAAPEQDLP 2985
Fly 2986 CTVMVWGLNDKE-QLGGLKGSKVKVP 3010 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
HERC2 | NP_608388.2 | RCC1 | 638..683 | CDD:278826 | |
RCC1 | 687..737 | CDD:278826 | 9/37 (24%) | ||
RCC1 | 740..787 | CDD:278826 | 14/52 (27%) | ||
RCC1 | 790..841 | CDD:278826 | 15/55 (27%) | ||
RCC1_2 | 828..857 | CDD:290274 | 6/30 (20%) | ||
Cyt-b5 | 1290..1363 | CDD:278597 | 15/76 (20%) | ||
MIB_HERC2 | 1928..1987 | CDD:284184 | 30/58 (52%) | ||
UBA_HERC2 | 2515..2559 | CDD:270585 | 7/43 (16%) | ||
Cul7 | 2624..2699 | CDD:288381 | 12/89 (13%) | ||
APC10-HERC2 | 2762..2932 | CDD:176485 | 36/203 (18%) | ||
RCC1 | 3037..3088 | CDD:278826 | |||
RCC1 | 3091..3140 | CDD:278826 | |||
RCC1 | 3144..3194 | CDD:278826 | |||
RCC1 | 3197..3246 | CDD:278826 | |||
RCC1 | 3250..3298 | CDD:278826 | |||
RCC1 | 3302..3350 | CDD:278826 | |||
RCC1_2 | 4136..4166 | CDD:290274 | |||
RCC1 | 4154..4203 | CDD:278826 | |||
RCC1 | 4206..4257 | CDD:278826 | |||
RCC1 | 4260..4309 | CDD:278826 | |||
RCC1 | 4312..4360 | CDD:278826 | |||
RCC1 | 4364..4413 | CDD:278826 | |||
HECTc | 4509..4880 | CDD:238033 | |||
HECTc | 4553..4878 | CDD:214523 | |||
Ufd4 | NP_609369.1 | ANK repeat | 393..420 | CDD:293786 | 9/34 (26%) |
ANK | 396..509 | CDD:238125 | 22/120 (18%) | ||
ANK repeat | 422..453 | CDD:293786 | 5/30 (17%) | ||
ANK repeat | 455..484 | CDD:293786 | 2/28 (7%) | ||
F5_F8_type_C | 1173..1298 | CDD:329041 | 27/124 (22%) | ||
MIB_HERC2 | 1333..1389 | CDD:310955 | 30/58 (52%) | ||
DamX | 1576..>1725 | CDD:330571 | 32/244 (13%) | ||
HECTc | 2265..2725 | CDD:238033 | 4/6 (67%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45446991 | |
Domainoid | 1 | 1.000 | 69 | 1.000 | Domainoid score | I6289 |
eggNOG | 1 | 0.900 | - | - | E1_COG5021 | |
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.830 |