Sequence 1: | NP_608388.2 | Gene: | HERC2 / 33035 | FlyBaseID: | FBgn0031107 | Length: | 4912 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038939619.1 | Gene: | Trip12 / 316575 | RGDID: | 1306607 | Length: | 2074 | Species: | Rattus norvegicus |
Alignment Length: | 2419 | Identity: | 468/2419 - (19%) |
---|---|---|---|
Similarity: | 736/2419 - (30%) | Gaps: | 866/2419 - (35%) |
- Green bases have known domain annotations that are detailed below.
Fly 2960 PGSTAGAGAVSTSHEEAAAAPEQDLPCTVMVWGLNDKEQLGGLK----------GSKVKVPTF-S 3013
Fly 3014 QTISRLRPIHIAG---GSKSLFIV-----------SQDGKVYACGEGTNGRLGLGVTH------- 3057
Fly 3058 --NVPLPHQLPVLRQYV-----VKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLGHGNRTTLDK 3115
Fly 3116 PRLVEALRAKKIRDVACGSS--------HSAAISSQGELYTWGLGEYGRLGHGDNTT-----QLK 3167
Fly 3168 PKLVTALAGRRVVQVACGS---RDAQTLALTED--------------GAVFSWGDGDFGKLGRGG 3215
Fly 3216 SEGSDTP----HEIERLSGIGVVQIECGAQFS-------LALTRAGEVWTWGKGDYYRLGHGGDQ 3269
Fly 3270 ----HVRK---------PQPIGGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTF 3321
Fly 3322 VNKKPALVIGLDAVFVNRVACGSSHSIAWGLPNASSDEEKRGPVPFSSTRDPLGGSSLGIYEAET 3386
Fly 3387 MQTLKQEAKPLNQSSLSESLALETPAARQAALGHVLRAMSILQARQLIVAALTSHSKVNFKERGA 3451
Fly 3452 VGGEEDHLIG--GPIMGAPLQLAETIAQGGGEAPADATDAGLQ----EHSPEAAVDALTGGMSGG 3510
Fly 3511 ANTL---PPLSAGPL---------------SAFQSLT---GSLSMSGSLSSSALPQHKHSRMSAS 3554
Fly 3555 AMSVMAATMTQQEEMLSHISHCHGLDDFGGLLGEPEAKSLVEL---------LKLAVCGRCG--- 3607
Fly 3608 PPSTSQTIADTLISLGAGTPAVAAMLLETCITELEDLCTSRHCLGKL-------PKPVMQESSHP 3665
Fly 3666 YVDNVNVTGVVRIP-------------------GAEMLRLEFDSQCSTEKRNDPLVIMDGTGR-- 3709
Fly 3710 -----VLAMRSGREFAHWA----------PEIRVLGDELRWKFSSDSSVNG--WGWRFWVHAIMP 3757
Fly 3758 AATLGESGSDRAVLSQPSMALVMSLLDSRLAPRQPSVLLRLASALAACSQLG----ALTTAQRIW 3818
Fly 3819 -----SLRKLH----AVLLLEQAPRP-------------QDPSLSTLLQPLIPELLRQYEYEEPQ 3861
Fly 3862 VRGGIHLMHSDYFKTLAALACDMQLDAALPAT------------------------SSSSSSSAA 3902
Fly 3903 PGAISSTGDVHKWAWFKRYCIAVRVAQSLIRRTELPRAFCLEVRKK----FAEMLPSSSSNSNAN 3963
Fly 3964 PGCQSPGASMLNSTTSLSSSTVSNVSPPPGITGEQPDLHCHAHQLESTSTLLH-EDHTLFQAPHD 4027
Fly 4028 AQLLQWLN---------RRP-----------DDWALS-------------------WGGAST--- 4050
Fly 4051 -----------IYGWGH--------NHRGQLGG------------------LEGSRIKTPTPCEA 4078
Fly 4079 LSLLR---------PVQLAGGEQSLFAVTPDGKLFATGYGSGGRLGVGGSDSWAIPTLLGSLQHV 4134
Fly 4135 -FVKKVAVNSGGKHCLALTTEGEVYAW-------------------GEGEDGK---LGHGNRMSY 4176
Fly 4177 DRPKLVEHLNG---------MSVADIACGSAHSAAITASGHVLTWGKGRYGRLGHGDSEDQLRPK 4232
Fly 4233 LVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKLPYKIESLAGLGVV 4297
Fly 4298 K---------------------------VECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVR 4335
Fly 4336 RPKKVAALQGKKIISIATGSLHCVACSDSGEVYTWGDNDEGQLG--DGTVTAIQRPRLVAALQGK 4398
Fly 4399 HIVKVTCGSAHTLALSTSQLSER---------LRPLPNPPLEYDLVRDLAPE-------ALHARL 4447
Fly 4448 IL--LHHFSEL------VCPCLAMLP----ISGDLSLGA---LKDVLVY---NI----------- 4483
Fly 4484 -------------------KEAAFRKVIQT------TMVRDKQHGPVIE-----LNRIQ-VKRSR 4517
Fly 4518 NRCNGLAGIDGMKSV---------FGQMVQKLPLLTQEALALPHRVWKVKFVGESVDDCGGGYSE 4573
Fly 4574 SIAEMCDELQNGSVPLLINTPNGRGEAGANRDCFLLDPTLSSVLQMNM-FRFLGVLMGIAVR--- 4634
Fly 4635 -TGSPLSINLAEPVWRQLTGEVLRPTDLTEVDRDYVAGLLCIRNM--------DDDPKLFTALEL 4690
Fly 4691 PFSTSSARGHEV-PLSTRYT----------------HISPRNRAEYVRLALGFRLHE-FDEQVKA 4737
Fly 4738 VRDGMSKVIPVPLLSLFSAAELQAMVCGSP----DIPLGLLKSVATYKGFDPSSALVTWFWEVME 4798
Fly 4799 EFTNQERSLFLRFVWGRTRLPRTIADFRGRDFVLQVLEK-----NPPDHFLPESYTCFFLLKMPR 4858
Fly 4859 YSCKAVLLEKLKYA 4872 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
HERC2 | NP_608388.2 | RCC1 | 638..683 | CDD:278826 | |
RCC1 | 687..737 | CDD:278826 | |||
RCC1 | 740..787 | CDD:278826 | |||
RCC1 | 790..841 | CDD:278826 | |||
RCC1_2 | 828..857 | CDD:290274 | |||
Cyt-b5 | 1290..1363 | CDD:278597 | |||
MIB_HERC2 | 1928..1987 | CDD:284184 | |||
UBA_HERC2 | 2515..2559 | CDD:270585 | |||
Cul7 | 2624..2699 | CDD:288381 | |||
APC10-HERC2 | 2762..2932 | CDD:176485 | |||
RCC1 | 3037..3088 | CDD:278826 | 12/64 (19%) | ||
RCC1 | 3091..3140 | CDD:278826 | 10/56 (18%) | ||
RCC1 | 3144..3194 | CDD:278826 | 10/57 (18%) | ||
RCC1 | 3197..3246 | CDD:278826 | 15/73 (21%) | ||
RCC1 | 3250..3298 | CDD:278826 | 13/60 (22%) | ||
RCC1 | 3302..3350 | CDD:278826 | 9/47 (19%) | ||
RCC1_2 | 4136..4166 | CDD:290274 | 9/48 (19%) | ||
RCC1 | 4154..4203 | CDD:278826 | 13/79 (16%) | ||
RCC1 | 4206..4257 | CDD:278826 | 8/50 (16%) | ||
RCC1 | 4260..4309 | CDD:278826 | 11/75 (15%) | ||
RCC1 | 4312..4360 | CDD:278826 | 10/47 (21%) | ||
RCC1 | 4364..4413 | CDD:278826 | 12/50 (24%) | ||
HECTc | 4509..4880 | CDD:238033 | 102/414 (25%) | ||
HECTc | 4553..4878 | CDD:214523 | 93/360 (26%) | ||
Trip12 | XP_038939619.1 | SRP1 | 489..>714 | CDD:227396 | 50/241 (21%) |
WWE | 814..876 | CDD:397111 | 17/96 (18%) | ||
HECTc | 1672..2072 | CDD:238033 | 102/418 (24%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG5021 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.900 |