Sequence 1: | NP_608388.2 | Gene: | HERC2 / 33035 | FlyBaseID: | FBgn0031107 | Length: | 4912 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001101688.1 | Gene: | Hecw2 / 316395 | RGDID: | 1593244 | Length: | 1578 | Species: | Rattus norvegicus |
Alignment Length: | 1804 | Identity: | 344/1804 - (19%) |
---|---|---|---|
Similarity: | 563/1804 - (31%) | Gaps: | 575/1804 - (31%) |
- Green bases have known domain annotations that are detailed below.
Fly 3385 ETMQTLKQEAKPLNQSSLSESLALE--------TPAARQAALGHVLRAMSILQARQLIV------ 3435
Fly 3436 ----------AALTSHSKVNF---KERGAVGGEEDHLI----GGPIMGAP-LQLAETIAQGGGEA 3482
Fly 3483 PADATDAGLQEHSPEAAVDALTGGMSGGANTLPPLSAGPLSAFQSLTGSLSMSGSLSSSALPQHK 3547
Fly 3548 HSRMSAS-AMSVMAATMTQQEEMLSHISHCHGLDDFGGLLGEPEAKSLVELLKLAV--------- 3602
Fly 3603 -CGRCGPPSTSQTIADTLISLGAGTP-------AVAAMLLETCITELED-LCTSR----HCLGKL 3654
Fly 3655 PKPVMQESSHPYVDNVNVTGVVRIPGAEMLRLEFDSQCSTEKRNDPLVIMDGTGRVLAMRSGREF 3719
Fly 3720 AHWAPEIRVLGDELRWKFSSDSSVNGWGWRFWVHAIMPAATLGESGSDRAVLSQPSMALVMS--- 3781
Fly 3782 LLDSRLAPRQPSVLLRLASALAACSQLGALTTAQRIWSLRKLHAVLLLEQAPRPQDPSLSTLLQ- 3845
Fly 3846 -----PLIPELLRQYEY---EEPQVRGGI-------HLMHSDYFKTLAALACDMQLDAALPAT-- 3893
Fly 3894 ------SSSSSSSAAPGAISS-------------TGDVHKWAWFKRYCIAVRVAQSLIRRTE--- 3936
Fly 3937 ------LPRAFCLEVRKKFAEMLPSSSSNSNANPGCQSPGASMLNSTTSLSSSTVSNVSPPPGIT 3995
Fly 3996 GEQPDLHCHAHQLESTSTLLHEDHTLFQAPHDAQLLQWLNRRPDDWALSWGGASTIYG----WGH 4056
Fly 4057 NHRGQLGGLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTP--------DGKLFATGYGSGGR 4113
Fly 4114 LGVGGSDSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEV-YAWG-----EG--------- 4163
Fly 4164 ------EDGKLG----------------------HGNRMSYDRPKLVEHLNGMSVADIACGSAHS 4200
Fly 4201 AAITASGHVL---------TWGK----------GRYGRLGHGDSEDQLRPKLVEALLGYR----- 4241
Fly 4242 -AIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKLPY-----KIESLAGLGVVKVE 4300
Fly 4301 CGSQFSVALTKSGAVY-------------TWGKGDFHRLGHGSVDHVRRPKKVAALQG------K 4346
Fly 4347 KIISIATG--SLHCVACSDSGEVYTWGDNDEGQLGDGTVTAIQRPRL--------VAALQGKHIV 4401
Fly 4402 KVTCGSAHTLALSTSQLSERLR-----PLPNPPLEYDLV-----RDLAPEALHARLILL------ 4450
Fly 4451 --------------HHFSELV-------CPCLAMLPISGDLSLGALKDVLVYNIKEAAF------ 4488
Fly 4489 RKVIQTTMVRDKQHGPVIELNRIQVKRSRNRCNGLAGIDGMKSV---------------FGQMVQ 4538
Fly 4539 KLPL------LTQEAL---------ALPHRVWKVKFVGESVDDCGGGYSESIAEMCDELQNGSVP 4588
Fly 4589 LLINTPNGRGEAGANRDCFLLDPTLSSVLQMN---MFRFLGVLMGIAVRTGSPLSINLAEPVWRQ 4650
Fly 4651 LTGEVLRPTDLTEVDRDYVAGLLCIRNMDDDPKL---FTALELPFSTSSAR-----GHEVPLSTR 4707
Fly 4708 YTHISPRNRAEYVRLALGFRLHE-FDEQVKAVRDGMSKVIPVPLLSLFSAAELQAMVCGSPDIPL 4771
Fly 4772 GLLKSVATYK-GFDPSSALVTWFWEVMEEFTNQERSLFLRFVWGRTRLP-RTIADFRGRDFVLQV 4834
Fly 4835 LEKNPPDHF----------LPESYTCFFLLKMPRYSCKAVLLEKLKYAI 4873 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
HERC2 | NP_608388.2 | RCC1 | 638..683 | CDD:278826 | |
RCC1 | 687..737 | CDD:278826 | |||
RCC1 | 740..787 | CDD:278826 | |||
RCC1 | 790..841 | CDD:278826 | |||
RCC1_2 | 828..857 | CDD:290274 | |||
Cyt-b5 | 1290..1363 | CDD:278597 | |||
MIB_HERC2 | 1928..1987 | CDD:284184 | |||
UBA_HERC2 | 2515..2559 | CDD:270585 | |||
Cul7 | 2624..2699 | CDD:288381 | |||
APC10-HERC2 | 2762..2932 | CDD:176485 | |||
RCC1 | 3037..3088 | CDD:278826 | |||
RCC1 | 3091..3140 | CDD:278826 | |||
RCC1 | 3144..3194 | CDD:278826 | |||
RCC1 | 3197..3246 | CDD:278826 | |||
RCC1 | 3250..3298 | CDD:278826 | |||
RCC1 | 3302..3350 | CDD:278826 | |||
RCC1_2 | 4136..4166 | CDD:290274 | 10/50 (20%) | ||
RCC1 | 4154..4203 | CDD:278826 | 14/91 (15%) | ||
RCC1 | 4206..4257 | CDD:278826 | 10/75 (13%) | ||
RCC1 | 4260..4309 | CDD:278826 | 7/53 (13%) | ||
RCC1 | 4312..4360 | CDD:278826 | 11/68 (16%) | ||
RCC1 | 4364..4413 | CDD:278826 | 12/56 (21%) | ||
HECTc | 4509..4880 | CDD:238033 | 101/419 (24%) | ||
HECTc | 4553..4878 | CDD:214523 | 89/345 (26%) | ||
Hecw2 | NP_001101688.1 | HECW_N | 45..162 | CDD:406866 | 19/117 (16%) |
C2_NEDL1-like | 185..321 | CDD:176073 | 34/194 (18%) | ||
MDN1 | <396..741 | CDD:227596 | 81/415 (20%) | ||
NESP55 | <464..632 | CDD:115071 | 34/194 (18%) | ||
WW | 815..844 | CDD:395320 | 5/28 (18%) | ||
HECW1_helix | 921..987 | CDD:408233 | 13/73 (18%) | ||
WW | 993..1024 | CDD:197736 | 8/41 (20%) | ||
HECTc | 1222..1576 | CDD:238033 | 94/373 (25%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG5021 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |