Sequence 1: | NP_608388.2 | Gene: | HERC2 / 33035 | FlyBaseID: | FBgn0031107 | Length: | 4912 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_017451567.1 | Gene: | Herc1 / 315771 | RGDID: | 1306366 | Length: | 4876 | Species: | Rattus norvegicus |
Alignment Length: | 5720 | Identity: | 1311/5720 - (22%) |
---|---|---|---|
Similarity: | 2009/5720 - (35%) | Gaps: | 1769/5720 - (30%) |
- Green bases have known domain annotations that are detailed below.
Fly 69 PDLYLRPLPFLDAKWLRADLIASLRNAADGAVLWNHLIQDCELVSSPTAPLLNARGQL------S 127
Fly 128 YLGDDGKHYCGAQQLKCSCCQPEYCGPLSACNCDGCRPLDSDTAIKKLTTQAAAQQAAHLSQATD 192
Fly 193 MVLSGWLWSQPPSQQARLDCQRSMISELQELALRAAGNCLSAQHLRQQLFIYERYFVAL------ 251
Fly 252 KRERERERKSTTSAQAVASVTTANTTIAATTANAAVESQPAEQQAEHGALGLARVATHAALNFSF 316
Fly 317 AFLRRAWR---SGEDTEMCSELLSEALASLQELPEATLFEAAVVSSLWLEVMERSIKFLRLVAL- 377
Fly 378 ---GDPMGNRCTAPLNDRHTALCLLLELGVQKGTLAATLECVVLLL------LLWEKDRAGNDNR 433
Fly 434 -------------DMPRKTGAPLQRILLRYQKIGATAKGGGIAGGEPAPVASATETFLRFLSLPK 485
Fly 486 SSAAIVDLRRAAVVIISHLDRMVQPLMPRCL----LRGGQATAASSSSAPQQRIYALGWPSLSKD 546
Fly 547 Q-----QGFSAEPTLSWSGESAGVPTLS----CRFQIK---QVACCETQMLILSQEGKLYTWRLA 599
Fly 600 KPEA------EPLPMEEVAHDVFISIAGHCEGRHFLAIDSNHNAYSWGTGEDHRLGHGDTHARAV 658
Fly 659 PTKI-AALEQHCVQSVYCGCSYSAAITCGGNLLTWGRGTYARLGHGNSDDRSLPTLVVALSDHMV 722
Fly 723 VDVALGSGDAHSLALTSEG-LVFAWGDGDYGKLGNGNCNGSLQPILVESLPR--VQRVFAGSQFS 784
Fly 785 VALSSEGQLYTWGKATCLGHQLVERSVQGCSVPRLVSSLQHKRIVDVAVSVAHCLALSSSGEVFG 849
Fly 850 WGRNDSQQICPASVSSEPLLRTPILVSLPTFPASGIACTSAQSLVWT--QSSHQGVPRRAPFVVD 912
Fly 913 LGEPTFRLLDQLLGMCSSQDNRQTP------NQESECIAVACLNLFRLQLLALIANGVEPRQVGL 971
Fly 972 ASGSRLLCSLKTRILGLAGGSQVLRTIQVAAQQALQDGWSVLLPTAAERAQTLTSLLPSEPG--Q 1034
Fly 1035 ASSAGHRFMTDLLVSSLMAEGGLESALQHAIRLESSSCSADC------GDGVHLP--------LL 1085
Fly 1086 QLITRLLSNNAALSQTRLSPTLGKQQEK------EEEEREQQHQEPSTSPSLSLLHRFQRLLLS- 1143
Fly 1144 -HIHQAQPEEETTGAEALLLQYMHALIPACVATLQKAHELALQCREPGENSFGQMVGHLGRVLQA 1207
Fly 1208 DISDALLNELLVGLLLLKRD--RPQCLGGLRWARLFLPLLRVLDRLNRALGEGELRDGDDMGWPG 1270
Fly 1271 IICRGGPK----GGPPPADPETHYVRRADMEN--LLLDGSRCIILAGYVCDLSGYNCESETLRSV 1329
Fly 1330 LDSGLGKDLTAEMSSQVHRTAMEHILEHHKLGKYMVQ---ASTEEKSSAPGPSRLTHFSSECALA 1391
Fly 1392 QLLGLVANLMCSGPALQPAELQCRQLDK--SSLLSGGLQLLQPSNPFDEEKGEARSSHSCHSTAG 1454
Fly 1455 NTPTELPPPLPMQQQLAPGRGKSQLQLRADAFISGLAEARVSEPPVAAWLALTERYCKAHNLMWH 1519
Fly 1520 Q-EFATEHPVQELERLLSAVLIRHQYLGGLVLNALETEVPPPRQLGEIIRLVHQA---------- 1573
Fly 1574 -----------KW---------------------------------------------------- 1575
Fly 1576 ---------------SVVRTR----------------------QQLNR----------SYKEVCA 1593
Fly 1594 PILERLRFLLYEVRPAISPQQRGLRRLPILQRP---------------------------PRFKM 1631
Fly 1632 LVRRLLQELRSSRQPAKPED------LLNASIQQEQEKKPQSMPKQELEEQEEEETLLRRLNE-- 1688
Fly 1689 --RQIHGEGELD-------PALMQDIVDFALQD--------------SCDVETARRAMYCQMQRY 1730
Fly 1731 QLRLAGLQIVQQLLE---------LHG-----------LLDAAQYSLLNGFLGLHLKSTSSGGGS 1775
Fly 1776 TGSGSSLH--------------VLGQLNMISAYQKARLLLAQSRVLDWAVRELRRLVNQEQQ--- 1823
Fly 1824 -------GHARGKD-----STNL--------GTYVL----LKRLPRA-----------------R 1847
Fly 1848 FLLSVFGLLAKELGPNELGFLINSGLLGTVLGLLAQTG-------GEGATG-------------- 1891
Fly 1892 -------------GQVHGELSILYEDSVLKQKSSKAQLSGPDLAKLM--------KIGTRIVRGA 1935
Fly 1936 DWKWGDQDGN---------------PPGEGRIISEVGEDGWVRV-----------EWYT---GAT 1971
Fly 1972 NSYRMGKEGQYDLQLADSALNVASPTEPEREDVSGSEASPTSD-SHPSKLLRHCAAKLLQILAVG 2035
Fly 2036 TGLHGAQLDKDALRGMTS-MFRTIIY-PKPSMSNISYALG-----------------WLNLGFIR 2081
Fly 2082 AISGDCPRLCLELSTPGWLSHYLSLLEQPAGNEAGVYRQLHCLRLLQLILAQWGAE-EEPRMPAL 2145
Fly 2146 VHQLFATLGRIALH-C-------PGDASLLPTAE--GKARVLLTASH-----SGSVAEELVALLR 2195
Fly 2196 RLHTLPSWNPVINSFLAQ-----KLCVAA-----------------ELLAEQS-----------H 2227
Fly 2228 STALDSEQ------VFVLGVLGAMGGHDLRPRVGLHCFHE--GSHMVIASFTPKGRCLLAPGGVG 2284
Fly 2285 SGVGFVKVQLPAVMPHLDHTVFSLSRLPMNEMLLNAWTVLLYGPAPELRELPSSADGRLDLALLR 2349
Fly 2350 AQQLQMAVLHTN---GVLYRHQVALRRILKQRAPGSIYASPDEPDRSDA---------------- 2395
Fly 2396 ------------ESQQPG-EQDQQLSSGSGQEPQLLIQCILLRATQASPVKACYSYMDLATAALN 2447
Fly 2448 CIQSLATQAH-----QELSEGGGVPPNGRALSSPPQPTMVHGVPVYNVARKEQKPSEQVEQKSKW 2507
Fly 2508 PAAATDAQLIGQIMEMGFTRRTVELALKQLSLQAEIMPTPEQIVQWILE-------HPDVCANTI 2565
Fly 2566 EEDTLPLASSASSHDPEADSDNECPSSN--STTSSSTSSDTVEGQPMAVSGPAPPVKFESRKDFQ 2628
Fly 2629 TADLYALYVRGLVRPGMTVRCCRDFEEIKQGDMGTVLIVDTEGLHDLN--VQVDWRNHGSTYWVC 2691
Fly 2692 FVHIELVEAAQTHHQPRPPPIAVGARVRLRTSSLRYGMLCPLRLGRS-----QGSSAIGVVSSVR 2751
Fly 2752 SKQLTVDFPDQPAWQ----GHINEVELVASQPT-----SATLPSLG---DSCSQMPPSD------ 2798
Fly 2799 --LIEDWSRCIRSLTVSSNEAAAKHLLNGSNQPWQSCSSGPCRHWIRLELHDRILVHSLTLKVSP 2861
Fly 2862 EDHSHMPSLLEIRVGDCVDSLKEYTWIPVPAGASRVLLMQQVPTYYPWVEVVVKQCQNNGIQCKI 2926
Fly 2927 HGIKFVGRRQQP--------------DLQHILANAQFLASEYSAGVGPGSTAGAGAVSTSHEEAA 2977
Fly 2978 A--APE-QDLPCTVMVWGLNDKEQLGGLKGSKVKVPTFSQTISRLRPIHIAGGSKSLFIVSQDGK 3039
Fly 3040 VYACGEGTNGRLGLGVTHNVPLPHQLPVLRQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGK 3104
Fly 3105 LGHGNRTTLDKPRLVEALRAKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHGDNTTQLK-- 3167
Fly 3168 -PKLVTALAGRRVVQVACGSRDAQTLALTEDGAVFSWGDGDF----GKLGRGGSEGSDTPHEIER 3227
Fly 3228 LSGIG---------------VVQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPI 3277
Fly 3278 GGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTFVNKKPALVIGLDAVFVNRVAC 3342
Fly 3343 GSSHSIAWGLPN------------------------------ASSDEEKRGPVPFSSTRDPLG-- 3375
Fly 3376 ---GSSLGIYEAETMQTLKQEAKPLNQSSLSES-----LALETPAARQAALGHVLRAMS------ 3426
Fly 3427 ------ILQARQLIVAALT--------SHSKVNFKERGAVGGEEDHLIGGPIMGAPLQLAETIA- 3476
Fly 3477 ---------------------------QGGGEAPADATDAG----------LQEHSPEAAVDA-- 3502
Fly 3503 ------LTGGMSGGAN----TLPPLSAGPLSAFQSLTGSLSMSGSLSSSALPQHKHSRMSASAMS 3557
Fly 3558 VMAATMTQQEEMLSHISHCHGLDDFGGLLGEPEAKSLVELLKLAVCGRCGP---PST--SQTIAD 3617
Fly 3618 TLI------SLGAGTPAVAAMLLETCITELEDLCTSRHCLGKLPKPVMQESSHPYVDNVNVT--- 3673
Fly 3674 --------GVVRIPGAEML----RLEFDSQCSTEKRNDPLVIM--DGTGRVLAMRSGREFAH-WA 3723
Fly 3724 PEIRVLGDELRWK----FSSDSSVNGWGWRFWVHAIMPAATLGESGSDRAVL------------- 3771
Fly 3772 ------SQPSM----------------------ALVMSLLDSRLAPRQPSVLLRLASALAACSQL 3808
Fly 3809 GALTTAQRIWSLR---------------------------------------------------- 3821
Fly 3822 -------KLHAVLLLEQAPRPQDPSLSTLLQPLIPELLRQYEYEEPQVRGGIHLMHSDYFKTLAA 3879
Fly 3880 LACDMQLDAAL---PATSSSSSSSAAPGAISSTGDVHKWAWFKRYCIAVRVAQSLIRRTELPRAF 3941
Fly 3942 CLEVRKKFAEMLPSSSSNSNANPGCQSPGASMLNSTTSLSSSTVSNVSPPPGITGEQPDLHCHAH 4006
Fly 4007 QLESTSTLLHEDHTLFQAPHDAQLLQWLNRRPDDWALSWGGASTIYGWGHNHRGQLGGLEGSRIK 4071
Fly 4072 TPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGYGSGGRLGVGGSDSWAIPTLLGSLQHVFV 4136
Fly 4137 KKVAVNSGGK-HCLALTTEGEVYAWGEGEDGKLGHGNRMSYDRPKLVEHLNGMSVADIACGSAHS 4200
Fly 4201 AAITASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDN-VW 4264
Fly 4265 SWGDGDYGKLGRGGSDGCKLPYKIESLAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGHG 4329
Fly 4330 SVDHVRRPKKVAALQGKKIISIATGSLHCVACSDSGEVYTWGDNDEGQLGDGTVTAIQRPRLVAA 4394
Fly 4395 LQGKHIVKVTCGSAHTLALSTSQLSERLRPLPNP---------PLEYDLVRDLAPEALHARLILL 4450
Fly 4451 HHFSELVCPCLAMLPISGD--------------LSLGALKDVLVYNIKEAAFRKVIQTTMVRDKQ 4501
Fly 4502 HGPVIELNRIQVKRSRNRCNGLAGIDGMKSVFGQMVQKLPLLTQEALALPHRVWKVKFVGESVDD 4566
Fly 4567 CGGGYSESIAEMCDELQNGSVPLLINTPNGRGEAGANRDCFLLDPTLSSVLQMNMFRFLGVLMGI 4631
Fly 4632 AVRTGSPLSINLAEPVWRQLTGEVLRPTDLTEVDRDYVAGLLCIRNMDD----DPKLFTALEL-P 4691
Fly 4692 FSTSSARGHEVPL--STRYTHISPRNRAEYVRLALGFRLHEFDEQVKAVRDGMSKVIPVPLLSLF 4754
Fly 4755 SAAELQAMVCGSPDIPLGLLKSVATYKGFDPSSALVTWFWEVMEEFTNQERSLFLRFVWGRTRLP 4819
Fly 4820 RTIADFRGRDFVLQVLEKNPPDHFLPESYTCFFLLKMPRYSCKAVLLEKLKYAIHFCKSIDTDEY 4884
Fly 4885 4884 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
HERC2 | NP_608388.2 | RCC1 | 638..683 | CDD:278826 | 16/45 (36%) |
RCC1 | 687..737 | CDD:278826 | 23/49 (47%) | ||
RCC1 | 740..787 | CDD:278826 | 20/49 (41%) | ||
RCC1 | 790..841 | CDD:278826 | 19/50 (38%) | ||
RCC1_2 | 828..857 | CDD:290274 | 13/28 (46%) | ||
Cyt-b5 | 1290..1363 | CDD:278597 | 10/74 (14%) | ||
MIB_HERC2 | 1928..1987 | CDD:284184 | 15/87 (17%) | ||
UBA_HERC2 | 2515..2559 | CDD:270585 | 8/50 (16%) | ||
Cul7 | 2624..2699 | CDD:288381 | 10/76 (13%) | ||
APC10-HERC2 | 2762..2932 | CDD:176485 | 35/189 (19%) | ||
RCC1 | 3037..3088 | CDD:278826 | 7/50 (14%) | ||
RCC1 | 3091..3140 | CDD:278826 | 12/48 (25%) | ||
RCC1 | 3144..3194 | CDD:278826 | 9/52 (17%) | ||
RCC1 | 3197..3246 | CDD:278826 | 12/67 (18%) | ||
RCC1 | 3250..3298 | CDD:278826 | 9/47 (19%) | ||
RCC1 | 3302..3350 | CDD:278826 | 9/47 (19%) | ||
RCC1_2 | 4136..4166 | CDD:290274 | 12/30 (40%) | ||
RCC1 | 4154..4203 | CDD:278826 | 24/48 (50%) | ||
RCC1 | 4206..4257 | CDD:278826 | 21/50 (42%) | ||
RCC1 | 4260..4309 | CDD:278826 | 27/49 (55%) | ||
RCC1 | 4312..4360 | CDD:278826 | 15/47 (32%) | ||
RCC1 | 4364..4413 | CDD:278826 | 22/48 (46%) | ||
HECTc | 4509..4880 | CDD:238033 | 164/377 (44%) | ||
HECTc | 4553..4878 | CDD:214523 | 151/331 (46%) | ||
Herc1 | XP_017451567.1 | RCC1 | 421..472 | CDD:278826 | 11/61 (18%) |
RCC1 | 476..526 | CDD:278826 | 16/49 (33%) | ||
RCC1 | 529..576 | CDD:278826 | 23/50 (46%) | ||
RCC1 | 579..629 | CDD:278826 | 20/49 (41%) | ||
RCC1 | 633..680 | CDD:278826 | 19/49 (39%) | ||
RCC1_2 | 667..696 | CDD:290274 | 13/28 (46%) | ||
RCC1 | 683..733 | CDD:278826 | 13/50 (26%) | ||
SPRY_HERC1 | 2030..2187 | CDD:293939 | 39/184 (21%) | ||
UBA_HERC1 | 2751..2794 | CDD:270584 | 11/62 (18%) | ||
WD40 | 3409..3793 | CDD:225201 | 84/446 (19%) | ||
WD40 | 3439..3790 | CDD:295369 | 77/413 (19%) | ||
WD40 repeat | 3447..3490 | CDD:293791 | 7/42 (17%) | ||
WD40 repeat | 3504..3539 | CDD:293791 | 8/46 (17%) | ||
WD40 repeat | 3544..3591 | CDD:293791 | 12/70 (17%) | ||
WD40 repeat | 3600..3638 | CDD:293791 | 6/37 (16%) | ||
WD40 repeat | 3644..3679 | CDD:293791 | 13/40 (33%) | ||
WD40 repeat | 3687..3718 | CDD:293791 | 8/40 (20%) | ||
WD40 repeat | 3765..3801 | CDD:293791 | 9/39 (23%) | ||
RCC1 | 4060..4112 | CDD:278826 | 18/51 (35%) | ||
RCC1 | 4115..4164 | CDD:278826 | 24/48 (50%) | ||
RCC1 | 4167..4216 | CDD:278826 | 21/50 (42%) | ||
RCC1 | 4219..4269 | CDD:278826 | 27/49 (55%) | ||
RCC1 | 4272..4321 | CDD:278826 | 15/48 (31%) | ||
RCC1_2 | 4308..4337 | CDD:290274 | 12/28 (43%) | ||
RCC1 | 4325..4373 | CDD:278826 | 22/47 (47%) | ||
HECTc | 4488..4856 | CDD:238033 | 165/381 (43%) | ||
HECTc | 4519..4852 | CDD:214523 | 153/335 (46%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1062377at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_102650 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |