DRSC/TRiP Functional Genomics Resources

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Protein Alignment HERC2 and Rccd1

DIOPT Version :10

Sequence 1:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster
Sequence 2:NP_775621.2 Gene:Rccd1 / 269955 MGIID:2444156 Length:377 Species:Mus musculus


Alignment Length:410 Identity:106/410 - (25%)
Similarity:161/410 - (39%) Gaps:103/410 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  4052 YGWGHNHRGQLGGLEGSR--IKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGYGSGGRL 4114
            :|:|....||..|...|.  :.:|.|..|...:  .|::.|......||..|::..:|..||.  
Mouse    10 FGFGFCGFGQALGSGNSHHSVYSPEPLHASDDI--CQVSAGWSYTALVTRGGRVELSGSVSGA-- 70

  Fly  4115 GVGGSDSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAW------------------- 4160
            ..|..|.||...||..|:         |.||       :..||.||                   
Mouse    71 ADGCRDVWASEELLVLLR---------NKGG-------SSTEVQAWVPGSALQGEPLWVQNLVSG 119

  Fly  4161 --GEGEDGKLGHGNRM----------SYDRPK------LVEHLNGMSVADIACGSAHSAAITASG 4207
              |:||| :....:||          :|..|:      |...|.   |..:..|:.|...:.|:|
Mouse   120 AKGQGED-EPSRESRMGTLPLLPCARAYVTPEPPFCQPLAPELR---VRQLELGAEHVLLLCAAG 180

  Fly  4208 HVLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYG 4272
            .|.:||.||:|:||||..|.:|.|:|:|||.|.|...:|.|..  .::|:::..:::.||..:.|
Mouse   181 QVFSWGAGRHGQLGHGTLEAELEPRLLEALQGLRMAKVAAGGW--HSVCLSETGDIYIWGWNESG 243

  Fly  4273 KLGRGGSDGCKLPYKIESLAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRRP 4337
            :|......|.:...:.|....|.    |.|.:..:|:..:||                      |
Mouse   244 QLALPTRSGTENKAEREEATELN----EDGLKEELAVADAGA----------------------P 282

  Fly  4338 KKVAALQ----------GKKIISIATGSLHCVACSDSGEVYTWGDNDEGQLGDGTVTAIQRPRLV 4392
            ....|:|          |...:..:.||.|....:.:||:||||....||||....|::.||..|
Mouse   283 AHFIAIQPFPALLDLPLGSDAVMASCGSRHTAVVTRTGELYTWGWGKYGQLGHKDSTSLDRPCCV 347

  Fly  4393 AALQGK--HIVKVTCGSAHT 4410
            .....:  .:..||||..:|
Mouse   348 EYFVERQLEVRAVTCGPWNT 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HERC2NP_608388.2 ATS1 625..>894 CDD:444065
Cyt-b5 1292..1364 CDD:459698
MIB_HERC2 1928..1988 CDD:461991
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:463286
APC10-HERC2 2762..2932 CDD:176485
ATS1 2987..3320 CDD:444065
RCC1 3302..3350 CDD:395335
ATS1 4050..4389 CDD:444065 98/385 (25%)
HECTc 4509..4880 CDD:238033
Rccd1NP_775621.2 Interaction with KDM8. /evidence=ECO:0000250|UniProtKB:A6NED2 1..172 43/185 (23%)
ATS1 <163..344 CDD:444065 57/208 (27%)
RCC1 2 179..230 23/52 (44%)
RCC1 3 232..289 14/82 (17%)
RCC1 4 319..372 19/49 (39%)
Blue background indicates that the domain is not in the aligned region.

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