Sequence 1: | NP_608388.2 | Gene: | HERC2 / 33035 | FlyBaseID: | FBgn0031107 | Length: | 4912 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_505392.3 | Gene: | glo-4 / 179306 | WormBaseID: | WBGene00017195 | Length: | 1386 | Species: | Caenorhabditis elegans |
Alignment Length: | 1774 | Identity: | 357/1774 - (20%) |
---|---|---|---|
Similarity: | 583/1774 - (32%) | Gaps: | 603/1774 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 2005 SGSEASPTSDSHPSKLLRHCAAKLLQILAVGT----GLHGAQLDKDALRGMTSMFRTIIYPKPSM 2065
Fly 2066 ------------SNISYALGWLNLGFIRAISGDCPRLCLELSTPGWLSHYLSLLEQPAGNEAGVY 2118
Fly 2119 RQLHCLRLLQLILAQWGAEEEPRMPALVHQLFATLGRIALHCPGDASLLPTAEGKARVLLTASHS 2183
Fly 2184 GS--VAEELVALLRRLHTLPSWNP----------VINSF-------------------LAQKLCV 2217
Fly 2218 AAELLAEQS-H--STALDSEQVFVLGVLGAMGGHDLRP--RVGLHCFHEGSHMVIASFTPKGRCL 2277
Fly 2278 LAPGGV----GSGVGFVKVQLPAVMPHLDHTVFSLS-------RLPMNEMLLNAWTVLLYGPAPE 2331
Fly 2332 LRELPSSADGRLDLALLRAQQLQMAVLHTNGVLYRHQVALRRILKQRAPGSIYASPDEPDRSDAE 2396
Fly 2397 SQQPGEQDQQLSSGSGQEPQLLIQCILLRATQASPVKACYSYMDLATAALNCIQSLATQAHQELS 2461
Fly 2462 EGGGVPPNGRALSSPPQPTMVHGVPVYNVARKEQKPSEQVEQKSKWPAAATDAQLIGQIMEMGFT 2526
Fly 2527 RRTVELALKQLS----------------LQA-EIMPTPEQIVQWIL--------EHPDVCANTIE 2566
Fly 2567 EDTLPLASSASSHDPEADSDNECPSSNSTTSSSTSSDTVEGQPMAVSGPAPPVKFESRKDFQTAD 2631
Fly 2632 LYALYVRGLVRPGMTVRCCRDFEEIKQGDMGT-VLIVDTEGLHDLNVQVDWRNHGSTYWVCFVHI 2695
Fly 2696 ELVEAAQTHHQPRPPPIAVGARVRLRTSSLRYGMLCPL---RLGRSQGSSAIGVVSSVRSKQLTV 2757
Fly 2758 DFPDQPAWQGHINEVELVASQPTSATLPSLGDSCSQMPPSDLIEDWSRCIRSLTVSSNEAAAKHL 2822
Fly 2823 LNGSNQPWQSCSSGPCRHWIRLELHDRIL-----VHSLT-LKVSPEDHSHMPSLLEIRVG-DCVD 2880
Fly 2881 SLKEYTWIPVPAGASRVLLMQQVPTYYPWVEVVVKQCQNNGIQCKIHGIKFVGRRQQPDLQHILA 2945
Fly 2946 NAQFLASEYSAGVGPGSTAGAGAVSTSHEEAAAAPEQDLPCTVMVWGLNDKEQLGGLKGSKVKVP 3010
Fly 3011 TFSQTISRLRPIHIAGGSKSLFIVSQDGKVYACGEGTNGRLGLGVTHNVPLPHQL----PVLRQY 3071
Fly 3072 VVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLGHGNRTTLDK--PRLVEALRAKKIRDVACGS 3134
Fly 3135 SHSAAISSQGELYTWGLGEYGRLGHGDNTTQLKPKLVTALAGRRVVQVACGSRDAQTLALTEDGA 3199
Fly 3200 VFSWG-------------------------DGDFGKLGRGGSE---GSDTPHEIER--------- 3227
Fly 3228 --LSGIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPIGGLRGRRVIHVAV 3290
Fly 3291 GALHCLAVTDAGQVYAWGDNDHGQQG-----SGNTF-VNKKPALVIGLDAVFVNRVACGSSHSIA 3349
Fly 3350 WGLPNASSDE--EKRGPVPFSSTRDPLGGSSLGIYEAETMQTLKQ-------------------- 3392
Fly 3393 ------EAKPLNQSSLSESL--ALETPAARQAALGHVL-----RAM---------------SILQ 3429
Fly 3430 ARQLIVAALTSHSKVNFKERGAVGGEEDHLIGGPIMGAPLQLAETIAQGGGEAPADATDAGLQEH 3494
Fly 3495 SPEAAVDALTGGMSGGANTLPPLSAGPLSAFQSLTGSLSMSGSLSSSALPQHKHSRMSASAMSVM 3559
Fly 3560 AATMTQQEEMLSHISHCHG 3578 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
HERC2 | NP_608388.2 | RCC1 | 638..683 | CDD:278826 | |
RCC1 | 687..737 | CDD:278826 | |||
RCC1 | 740..787 | CDD:278826 | |||
RCC1 | 790..841 | CDD:278826 | |||
RCC1_2 | 828..857 | CDD:290274 | |||
Cyt-b5 | 1290..1363 | CDD:278597 | |||
MIB_HERC2 | 1928..1987 | CDD:284184 | |||
UBA_HERC2 | 2515..2559 | CDD:270585 | 15/68 (22%) | ||
Cul7 | 2624..2699 | CDD:288381 | 18/75 (24%) | ||
APC10-HERC2 | 2762..2932 | CDD:176485 | 26/176 (15%) | ||
RCC1 | 3037..3088 | CDD:278826 | 13/54 (24%) | ||
RCC1 | 3091..3140 | CDD:278826 | 18/50 (36%) | ||
RCC1 | 3144..3194 | CDD:278826 | 11/49 (22%) | ||
RCC1 | 3197..3246 | CDD:278826 | 18/87 (21%) | ||
RCC1 | 3250..3298 | CDD:278826 | 16/47 (34%) | ||
RCC1 | 3302..3350 | CDD:278826 | 17/53 (32%) | ||
RCC1_2 | 4136..4166 | CDD:290274 | |||
RCC1 | 4154..4203 | CDD:278826 | |||
RCC1 | 4206..4257 | CDD:278826 | |||
RCC1 | 4260..4309 | CDD:278826 | |||
RCC1 | 4312..4360 | CDD:278826 | |||
RCC1 | 4364..4413 | CDD:278826 | |||
HECTc | 4509..4880 | CDD:238033 | |||
HECTc | 4553..4878 | CDD:214523 | |||
glo-4 | NP_505392.3 | RCC1_2 | 773..801 | CDD:290274 | 7/27 (26%) |
RCC1_2 | 823..852 | CDD:290274 | 8/30 (27%) | ||
RCC1 | 839..889 | CDD:278826 | 18/50 (36%) | ||
RCC1_2 | 876..905 | CDD:290274 | 8/28 (29%) | ||
RCC1 | 893..941 | CDD:278826 | 11/49 (22%) | ||
RCC1_2 | 1018..1047 | CDD:290274 | 11/28 (39%) | ||
RCC1 | 1034..1082 | CDD:278826 | 16/47 (34%) | ||
RCC1_2 | 1070..1099 | CDD:290274 | 13/28 (46%) | ||
VAD1-2 | 1303..>1371 | CDD:291956 | 14/77 (18%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG5184 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1062377at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |