Sequence 1: | NP_608388.2 | Gene: | HERC2 / 33035 | FlyBaseID: | FBgn0031107 | Length: | 4912 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_490834.1 | Gene: | herc-1 / 171700 | WormBaseID: | WBGene00021685 | Length: | 1019 | Species: | Caenorhabditis elegans |
Alignment Length: | 1134 | Identity: | 260/1134 - (22%) |
---|---|---|---|
Similarity: | 402/1134 - (35%) | Gaps: | 355/1134 - (31%) |
- Green bases have known domain annotations that are detailed below.
Fly 3965 GCQSPGASMLNSTTSLSSSTVSNVSPPPGITGEQPDLHCHAHQLESTSTLLHEDHTLFQAPHDAQ 4029
Fly 4030 LLQWLNRRPDDWALSWGGASTIYGWGHNHRGQLGGLEGSRIK---TPTPCEALSLLRPVQLAGGE 4091
Fly 4092 QSLFAVTPDGKLFATGYGSGGRLGVGGSDSW-AIPTLLGSLQHVFVKKVAVNSGGKHCLALTTEG 4155
Fly 4156 EVYAWGEGEDGKLGHGNRMSYDRPKLVEHLNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRL 4220
Fly 4221 GHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKLP 4285
Fly 4286 YKIESLAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGHG-SVDHVRRPKKVAALQGKKII 4349
Fly 4350 SIATGSLHCVA-CSDSGEVYTWGDNDEGQLGDGTVTAIQRPRLVAALQGKHIVKVTCGSAHTLAL 4413
Fly 4414 STSQLSERLRPL-PNPPLEYDL------VRDLAPE--ALHARLILLHHFSELV------------ 4457
Fly 4458 ------C--------------------------------------------------PC---LAM 4463
Fly 4464 LP----ISGDLSLGALKDV---------LVYNIKEAA------------FRKVIQT------TMV 4497
Fly 4498 RDKQHGP-------------------------------------------VIELNRIQVKRSRNR 4519
Fly 4520 CN---------GLAGIDGMKSVFGQMVQKLPLLTQEAL----------ALPHRVWKVK--FVGES 4563
Fly 4564 VDDCGGGYSESIAEMCDELQNGSVPLLINTPNGRGE-----AGANRDCFLLDPTLSSVLQMN--- 4620
Fly 4621 -----------------------MFRFLGVLMGIAVRTGS--PLSINLAEPVWRQLTGEVLRPTD 4660
Fly 4661 LTEVDRDYVAGLLCIRNMDDDPKLFTALELPFSTS---SARGHEVPLSTRYTH--ISPRNRAEYV 4720
Fly 4721 RLALGFRLH-----EFDEQVKAVRDGMSKVIPVPLLSLFSAAELQAMVCGSPDIPLGLLKSVATY 4780
Fly 4781 KG-FDPSSALVTWFWEVMEEFTNQERSLFLRFVWGRTRLPRTIADFRGRDFVLQVLEKNPPDHFL 4844
Fly 4845 PESYTCFFLLKMPRYSCKAVLLEKLKYAI 4873 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
HERC2 | NP_608388.2 | RCC1 | 638..683 | CDD:278826 | |
RCC1 | 687..737 | CDD:278826 | |||
RCC1 | 740..787 | CDD:278826 | |||
RCC1 | 790..841 | CDD:278826 | |||
RCC1_2 | 828..857 | CDD:290274 | |||
Cyt-b5 | 1290..1363 | CDD:278597 | |||
MIB_HERC2 | 1928..1987 | CDD:284184 | |||
UBA_HERC2 | 2515..2559 | CDD:270585 | |||
Cul7 | 2624..2699 | CDD:288381 | |||
APC10-HERC2 | 2762..2932 | CDD:176485 | |||
RCC1 | 3037..3088 | CDD:278826 | |||
RCC1 | 3091..3140 | CDD:278826 | |||
RCC1 | 3144..3194 | CDD:278826 | |||
RCC1 | 3197..3246 | CDD:278826 | |||
RCC1 | 3250..3298 | CDD:278826 | |||
RCC1 | 3302..3350 | CDD:278826 | |||
RCC1_2 | 4136..4166 | CDD:290274 | 13/29 (45%) | ||
RCC1 | 4154..4203 | CDD:278826 | 16/48 (33%) | ||
RCC1 | 4206..4257 | CDD:278826 | 15/50 (30%) | ||
RCC1 | 4260..4309 | CDD:278826 | 8/48 (17%) | ||
RCC1 | 4312..4360 | CDD:278826 | 13/48 (27%) | ||
RCC1 | 4364..4413 | CDD:278826 | 16/48 (33%) | ||
HECTc | 4509..4880 | CDD:238033 | 100/430 (23%) | ||
HECTc | 4553..4878 | CDD:214523 | 89/367 (24%) | ||
herc-1 | NP_490834.1 | ATS1 | 2..359 | CDD:227511 | 128/453 (28%) |
HECTc | 667..1016 | CDD:238033 | 89/367 (24%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG5021 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1062377at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |