| Sequence 1: | NP_608388.2 | Gene: | HERC2 / 33035 | FlyBaseID: | FBgn0031107 | Length: | 4912 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_002938676.3 | Gene: | herc3 / 100488790 | XenbaseID: | XB-GENE-968537 | Length: | 1050 | Species: | Xenopus tropicalis |
| Alignment Length: | 1090 | Identity: | 246/1090 - (22%) |
|---|---|---|---|
| Similarity: | 420/1090 - (38%) | Gaps: | 317/1090 - (29%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 4054 WGHNHRGQLG---GLEGSRIKTPTPCEALSLLRPVQ--LAGGEQSLFAVTPDGKLFATGYGSGGR 4113
Fly 4114 LGVG--GSDSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDGKLGHGNRMSY 4176
Fly 4177 DR-PKLVEHLNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRLGHGDS-EDQLRPKLVEALLG 4239
Fly 4240 YRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKLPYKIESLAGLGVVKVECGSQ 4304
Fly 4305 FSVALTKSGAVYTWGKGDFHRLGHGSVDHVRRPKKVAALQGKKIISIATGSLHCVA-CSDSGEVY 4368
Fly 4369 TWGDNDEGQLGDGTVTAIQRPRLV----AALQGK----------HIVK----------VTCGSA- 4408
Fly 4409 ---------------HTLALSTSQL--------------------------------------SE 4420
Fly 4421 RLRPLPN-PPLEYDLVRDLAPEAL---HARLI--LLHHFSELVCPCLAMLP-------------- 4465
Fly 4466 ----------------------------------------------------------ISGDLSL 4472
Fly 4473 -----------GALK---------------------------------DVLVYNIKEAAFRKVIQ 4493
Fly 4494 TTMVRD-------------KQHGPVIELN-RIQVKRSRNRCNGLAGIDGMKSVFGQMVQKL-PLL 4543
Fly 4544 TQEALALPH-----------------------RVWKVKFVGESVDDCGGGYSESIAEMCDELQNG 4585
Fly 4586 SVPLLINTPNGRGEAGANRDCFLLDPTLSSVLQMNMFRFLGVLMGIAVRTGSPLSINLAEPVWRQ 4650
Fly 4651 LTG--------EVLRPT------DLTEVDRDYVAGLLCIRNMDDDPKLFTALELPFSTSSARGHE 4701
Fly 4702 VPLSTRYTHI--SPRNRAEYVRLALGFRLHE-FDEQVKAVRDGMSKVIPVPLLSLFSAAELQAMV 4763
Fly 4764 CGSPDIPLGLLKSVATYKGFDPSSA--LVTWFWEVMEEFTNQERSLFLRFVWGRTRLPRTIADFR 4826
Fly 4827 GRDFVLQVLEKNPPDHFLPESYTCFFLLKMPRYSCKAVLLEKLKYAI-HF 4875 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| HERC2 | NP_608388.2 | RCC1 | 638..683 | CDD:278826 | |
| RCC1 | 687..737 | CDD:278826 | |||
| RCC1 | 740..787 | CDD:278826 | |||
| RCC1 | 790..841 | CDD:278826 | |||
| RCC1_2 | 828..857 | CDD:290274 | |||
| Cyt-b5 | 1290..1363 | CDD:278597 | |||
| MIB_HERC2 | 1928..1987 | CDD:284184 | |||
| UBA_HERC2 | 2515..2559 | CDD:270585 | |||
| Cul7 | 2624..2699 | CDD:288381 | |||
| APC10-HERC2 | 2762..2932 | CDD:176485 | |||
| RCC1 | 3037..3088 | CDD:278826 | |||
| RCC1 | 3091..3140 | CDD:278826 | |||
| RCC1 | 3144..3194 | CDD:278826 | |||
| RCC1 | 3197..3246 | CDD:278826 | |||
| RCC1 | 3250..3298 | CDD:278826 | |||
| RCC1 | 3302..3350 | CDD:278826 | |||
| RCC1_2 | 4136..4166 | CDD:290274 | 10/29 (34%) | ||
| RCC1 | 4154..4203 | CDD:278826 | 17/49 (35%) | ||
| RCC1 | 4206..4257 | CDD:278826 | 15/51 (29%) | ||
| RCC1 | 4260..4309 | CDD:278826 | 11/48 (23%) | ||
| RCC1 | 4312..4360 | CDD:278826 | 16/47 (34%) | ||
| RCC1 | 4364..4413 | CDD:278826 | 22/88 (25%) | ||
| HECTc | 4509..4880 | CDD:238033 | 102/412 (25%) | ||
| HECTc | 4553..4878 | CDD:214523 | 92/343 (27%) | ||
| herc3 | XP_002938676.3 | RCC1 | 3..49 | CDD:395335 | 18/47 (38%) |
| ATS1 | 44..353 | CDD:227511 | 97/317 (31%) | ||
| HECTc | 702..1048 | CDD:238033 | 93/370 (25%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 1 | 1.010 | - | - | D1062377at2759 | |
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 2 | 1.920 | |||||