DRSC/TRiP Functional Genomics Resources

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Protein Alignment HERC2 and Rcc1

DIOPT Version :10

Sequence 1:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster
Sequence 2:NP_001184011.1 Gene:Rcc1 / 100088 MGIID:1913989 Length:434 Species:Mus musculus


Alignment Length:433 Identity:117/433 - (27%)
Similarity:184/433 - (42%) Gaps:65/433 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly  2914 VKQCQNNGIQCKIHGIKFVGRRQQPDLQHILANAQFLASEYSAGVGPGSTAGAGAVSTSHEEAAA 2978
            ||..:|.|...:...:.......:|.|...|            |.|.....|.|......::.|.
Mouse    23 VKDTRNRGPATRSCQVSHRSHNTEPGLVLTL------------GQGDVGQLGLGESVLERKKPAL 75

  Fly  2979 AP-EQDL----------PC-----TVMVWGLNDKEQLG---GLKGSKVKVPTFSQTISRLRPIHI 3024
            .| .||:          .|     .|..:|.||:..||   .::||:: ||  .:...:.:.:.:
Mouse    76 VPLLQDVVQAEAGGMHTVCLSQSGQVYSFGCNDEGALGRDTSVEGSEM-VP--GKVELQEKVVQV 137

  Fly  3025 AGGSKSLFIVSQDGKVYACG--EGTNGRLGLGVTHNVPLPHQL-PVLRQYVVKKVAVHSGGKHAL 3086
            :.|......:::||:|:..|  ...||.:||    ..|:...: ||..|.....|.|.||..|.:
Mouse   138 SAGDSHTAALTEDGRVFLWGSFRDNNGVIGL----LEPMKKSMVPVQVQLDAPVVKVASGNDHLV 198

  Fly  3087 ALTLDGKVFSWGEGEDGKLG--------HGNRTTLDK---PRLVEALRAK------KIRDVACGS 3134
            .||.||.:::.|.||.|:||        .|.|..|.:   ||.| .|:::      :.:|..||:
Mouse   199 MLTNDGDLYTLGCGEQGQLGRVPELFANRGGRQGLGRLLVPRCV-LLKSRGTRGRVRFQDAFCGA 262

  Fly  3135 SHSAAISSQGELYTWGLGEYGRLGHGDNTTQLKPKLVTALAGRRVVQVACGSRDAQTLALTEDGA 3199
            ..:.|||.:|.:|.:||..|.:||.....:...|:.:|:........|........|:.:..:|.
Mouse   263 YFTFAISREGHVYGFGLSNYHQLGTPGTGSCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGK 327

  Fly  3200 VFSWGDGDFGKLGRG-GSEGSDTPHEIERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRL 3263
            .:|.|..::|:||.| |:|....|..|.||..:.  .:.|||....|:::.|.|:.||.|..|:|
Mouse   328 AYSLGRAEYGRLGLGEGAEEKSIPTLISRLPVVS--SVACGASVGYAVSKDGRVFAWGMGTNYQL 390

  Fly  3264 GHGGDQHVRKPQPIGG--LRGRRVIHVAVGALH-CLAVTDAGQ 3303
            |.|.|:....|..:.|  |..|.|:.|:.|..| .|.|.|..|
Mouse   391 GTGQDEDAWSPVEMTGKQLENRVVLTVSSGGQHTVLLVKDQAQ 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HERC2NP_608388.2 ATS1 625..>894 CDD:444065
Cyt-b5 1292..1364 CDD:459698
MIB_HERC2 1928..1988 CDD:461991
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:463286
APC10-HERC2 2762..2932 CDD:176485 4/17 (24%)
ATS1 2987..3320 CDD:444065 101/344 (29%)
RCC1 3302..3350 CDD:395335 1/2 (50%)
ATS1 4050..4389 CDD:444065
HECTc 4509..4880 CDD:238033
Rcc1NP_001184011.1 ATS1 45..402 CDD:444065 101/378 (27%)
Blue background indicates that the domain is not in the aligned region.

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