Sequence 1: | NP_608388.2 | Gene: | HERC2 / 33035 | FlyBaseID: | FBgn0031107 | Length: | 4912 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_021330683.1 | Gene: | herc5.3 / 100073325 | ZFINID: | ZDB-GENE-070615-14 | Length: | 1002 | Species: | Danio rerio |
Alignment Length: | 969 | Identity: | 227/969 - (23%) |
---|---|---|---|
Similarity: | 377/969 - (38%) | Gaps: | 253/969 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 4075 PCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGYGSGGRLGV----GGSDSWAIPTLLGSLQHVF 4135
Fly 4136 VKKVAVNSGGKHCLALTTEGEVYAWGEGEDGKLGHGNRMSYDRPKLVEHLNGMSVADIACGSAHS 4200
Fly 4201 AAITASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDN-VW 4264
Fly 4265 SWGDGDYGKLGRGGSDGCKLPYKIESLAGLGVVKVEC----------GSQFSVAL---------- 4309
Fly 4310 -TKSGAVYTWGKGDFHRLGHGSVDHVRRPKKVAALQGKKIISIATGSLHCVACSDSGEVYTWGDN 4373
Fly 4374 DEGQLGDGTVTAIQRPRLVAALQGKHIVKVTCG--------SAHTLALSTSQLSERLRPL----- 4425
Fly 4426 ----PNPPLEYDL-VRDLAPEALH------ARLILLHHFSEL-VCPCL--------AMLP----- 4465
Fly 4466 ------------ISGDLSLGALKDVLVYNIKEAAFRKVIQ-------TTMVRDKQHGPVI-ELNR 4510
Fly 4511 IQVKRSRNRCNGLAGIDGMKSVFGQMVQKLPL---------------LTQEALALPHRVWKVKFV 4560
Fly 4561 GESV----------DDCGGGYSESIAEMCDEL---QNGSVPLLINTPN----------------- 4595
Fly 4596 --------GRGE----------------AGANRDCFLLDPTLSSVLQMNM--------FRFLGVL 4628
Fly 4629 MGIAVRTGSPLSINLAEPVWRQLTGEVLRPTDLTEVDRDYVAGLLCIRNM--DDDPKLFTALELP 4691
Fly 4692 FSTSSARGHEVPLSTRYTHISPRNRAEYVRLALGFRLHEFDEQVKA----VRDGMSKVIPVPLLS 4752
Fly 4753 LFSAAELQAMVCGSPDIPLGLLKSVATYKGFDPSSALVTWFWEVMEEFTNQERSLFLRFVWGRTR 4817
Fly 4818 LPRTIADFRGRDFVLQVLEKNPPDHFLPESYTCFFLLKMPRYSCKAVLLEKLKYAIHFC 4876 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
HERC2 | NP_608388.2 | RCC1 | 638..683 | CDD:278826 | |
RCC1 | 687..737 | CDD:278826 | |||
RCC1 | 740..787 | CDD:278826 | |||
RCC1 | 790..841 | CDD:278826 | |||
RCC1_2 | 828..857 | CDD:290274 | |||
Cyt-b5 | 1290..1363 | CDD:278597 | |||
MIB_HERC2 | 1928..1987 | CDD:284184 | |||
UBA_HERC2 | 2515..2559 | CDD:270585 | |||
Cul7 | 2624..2699 | CDD:288381 | |||
APC10-HERC2 | 2762..2932 | CDD:176485 | |||
RCC1 | 3037..3088 | CDD:278826 | |||
RCC1 | 3091..3140 | CDD:278826 | |||
RCC1 | 3144..3194 | CDD:278826 | |||
RCC1 | 3197..3246 | CDD:278826 | |||
RCC1 | 3250..3298 | CDD:278826 | |||
RCC1 | 3302..3350 | CDD:278826 | |||
RCC1_2 | 4136..4166 | CDD:290274 | 9/29 (31%) | ||
RCC1 | 4154..4203 | CDD:278826 | 17/48 (35%) | ||
RCC1 | 4206..4257 | CDD:278826 | 19/50 (38%) | ||
RCC1 | 4260..4309 | CDD:278826 | 13/59 (22%) | ||
RCC1 | 4312..4360 | CDD:278826 | 7/47 (15%) | ||
RCC1 | 4364..4413 | CDD:278826 | 8/56 (14%) | ||
HECTc | 4509..4880 | CDD:238033 | 100/451 (22%) | ||
HECTc | 4553..4878 | CDD:214523 | 91/392 (23%) | ||
herc5.3 | XP_021330683.1 | RCC1 | <74..349 | CDD:332518 | 77/248 (31%) |
HECTc | 665..1000 | CDD:331829 | 82/343 (24%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1062377at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.920 |