DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)G0004 and rbp28

DIOPT Version :9

Sequence 1:NP_608387.1 Gene:l(1)G0004 / 33033 FlyBaseID:FBgn0027334 Length:240 Species:Drosophila melanogaster
Sequence 2:NP_594514.2 Gene:rbp28 / 2541679 PomBaseID:SPAC2C4.11c Length:241 Species:Schizosaccharomyces pombe


Alignment Length:242 Identity:122/242 - (50%)
Similarity:166/242 - (68%) Gaps:18/242 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EAENIRADAFEPAKRATKRGASGGGQQDVEMQVDEATG---IEGQVLGSSRASAPPKAKRARSEL 63
            |.:|:..|        |.||       ::|.......|   |||....:...::..|.:.|:.::
pombe    15 ENDNVMID--------TTRG-------EIEFSDSAVNGTMDIEGAPKFAPAKTSAEKKRGAKPQM 64

  Fly    64 RKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETPDIANLQRGADFVRAF 128
            |:|.:||||.:.|:..|.|::.|:|||:.||:|.|.|:|.||||....|.|...||:|.|||:||
pombe    65 RRVPIPPHRMTPLRNVWPKLYPPLVEHLLLQVRMNTKSRSVELRESKATKDPGALQKGMDFVQAF 129

  Fly   129 LCGFEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFTIENVTKTRIVLA 193
            ..||::|||:|||||:||::::|||||||||:|||.||||||:||:||:|||.|||.::||||||
pombe   130 ALGFDIDDAIALLRLDDLYIDTFEIKDVKTLQGDHLSRAIGRIAGQGGKTKFAIENASRTRIVLA 194

  Fly   194 DSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAVASRLSERM 240
            ||||||||.:.||::|:.||.:|||||||.|||.|||..|:|..||:
pombe   195 DSKIHILGGFTNIRIAKDAVVSLILGSPPGKVYANLRNAAARAKERI 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)G0004NP_608387.1 Krr1 61..239 CDD:224019 107/177 (60%)
KH 165..217 CDD:197652 35/51 (69%)
rbp28NP_594514.2 Krr1 56..227 CDD:224019 102/170 (60%)
KH 166..218 CDD:197652 35/51 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 237 1.000 Domainoid score I473
eggNOG 1 0.900 - - E1_COG1094
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6961
Inparanoid 1 1.050 237 1.000 Inparanoid score I828
OMA 1 1.010 - - QHG53604
OrthoFinder 1 1.000 - - FOG0005076
OrthoInspector 1 1.000 - - oto101041
orthoMCL 1 0.900 - - OOG6_101323
Panther 1 1.100 - - LDO PTHR12826
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R943
SonicParanoid 1 1.000 - - X3599
TreeFam 1 0.960 - -
1413.860

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