DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1504 and lgi1b

DIOPT Version :10

Sequence 1:NP_608382.2 Gene:CG1504 / 33028 FlyBaseID:FBgn0031100 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_001122241.1 Gene:lgi1b / 654829 ZFINID:ZDB-GENE-060217-1 Length:543 Species:Danio rerio


Alignment Length:318 Identity:75/318 - (23%)
Similarity:126/318 - (39%) Gaps:52/318 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 VCLWNSQQTETSKSCPAECICLSQTQVLCNTGGLEQIPLRQLPATVENLALTKNNFPIIKPDSFA 80
            |.|:...:......||:.|.| ::...||.  .:..:| ...|..|.:|:..|:.|..|...||.
Zfish    20 VLLFAESRRGKQPRCPSGCTC-TKDNALCE--NVRSVP-HSFPPDVISLSFVKSGFSEIAGGSFL 80

  Fly    81 GLRALKKLSLDGNNITRIKQFAFRGLPRLKELSIQYTPLQMVAQFAFAGLQNLSTILLSHNQIQR 145
            ...:|:.|....|:...|.:.||:|||.|:.|.|:...::.::..||.||::|..:.|::|.::.
Zfish    81 HTPSLQLLLFTANSFDLIDEDAFQGLPHLEYLFIENNKIESISPHAFRGLKSLIHLSLAYNNLET 145

  Fly   146 IEGNAFAGTSNIKLILLTNNPLIRIDSS-------AFSSLTNVGHLIL--PS-----GIRSIEQD 196
            :..:.|.|...:..:.|..| |...|..       .||:...|..|..  ||     .|..:...
Zfish   146 LPRDIFKGMDALTKVDLRGN-LFSCDCKLKWLVEWMFSTNATVDQLYCSGPSPYQGKKINDLMPQ 209

  Fly   197 AFFGMDTVGLLK--LAYMDLKEVAPFTFRGLSNVLLLTLQESDLGVICADAFTGLTQVETLQILN 259
            :|..:.....||  ||:..: .|..|::            .:|..|:.|..|||.........:|
Zfish   210 SFDCITAEFALKKTLAFESI-SVEAFSY------------GNDQYVVYAQPFTGRCNFMEWDHVN 261

  Fly   260 NKIDSIEELNFTSTAAIKHLKFFGNHVLETPDPNSIIVDGVEHLQLVSNHFPCGCHIH 317
            .:....|.:..|||...|                .:::|  :||.:|......|.||:
Zfish   262 MEFRDHEIILSTSTVVCK----------------PMVID--DHLFIVVAQLFGGSHIY 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1504NP_608382.2 leucine-rich repeat 61..84 CDD:275380 7/22 (32%)
LRR_5 73..200 CDD:463839 36/140 (26%)
leucine-rich repeat 85..108 CDD:275380 8/22 (36%)
leucine-rich repeat 109..132 CDD:275380 7/22 (32%)
leucine-rich repeat 133..156 CDD:275380 5/22 (23%)
leucine-rich repeat 157..180 CDD:275380 6/29 (21%)
leucine-rich repeat 181..203 CDD:275380 6/28 (21%)
leucine-rich repeat 204..227 CDD:275380 6/24 (25%)
leucine-rich repeat 228..251 CDD:275380 6/22 (27%)
leucine-rich repeat 252..275 CDD:275380 5/22 (23%)
lgi1bNP_001122241.1 LRR_8 83..143 CDD:404697 19/59 (32%)
leucine-rich repeat 85..108 CDD:275378 8/22 (36%)
leucine-rich repeat 109..132 CDD:275378 7/22 (32%)
LRR_8 128..>168 CDD:404697 10/40 (25%)
leucine-rich repeat 133..156 CDD:275378 5/22 (23%)
leucine-rich repeat 157..169 CDD:275378 3/12 (25%)
LRRCT 165..213 CDD:214507 11/48 (23%)
EPTP 217..257 CDD:461033 12/52 (23%)
EPTP 263..302 CDD:461033 12/57 (21%)
EPTP 309..354 CDD:461033
EPTP 358..399 CDD:461033
EPTP 405..446 CDD:461033
EPTP 450..490 CDD:461033
EPTP 496..536 CDD:461033
Blue background indicates that the domain is not in the aligned region.

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