DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1504 and lrrc4ca

DIOPT Version :9

Sequence 1:NP_001259742.1 Gene:CG1504 / 33028 FlyBaseID:FBgn0031100 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_001018583.1 Gene:lrrc4ca / 553785 ZFINID:ZDB-GENE-050522-533 Length:647 Species:Danio rerio


Alignment Length:364 Identity:101/364 - (27%)
Similarity:158/364 - (43%) Gaps:61/364 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LVLIIALSVVVCLWNSQQTETSKSCPAECICLSQ-TQVLCNTGGLEQIPLRQLPATVENLALTKN 69
            |.|.:.|.||..|..:|      :||:.|.|.:| ::|:|...||..:| ..:......|.|.:|
Zfish    30 LSLALQLLVVAGLVRAQ------TCPSVCSCSNQFSKVICTRRGLRDVP-DGISTNTRYLNLQEN 87

  Fly    70 NFPIIKPDSFAGLRALKKLSLDGNNITRIKQFAFRGLPRLKELSIQYTPLQMVAQFAFAGLQNLS 134
            ...:||.|||..||.|:.|.|..|:|..|            |:.            ||.||.||:
Zfish    88 LIQVIKVDSFKHLRHLEILQLSKNHIRNI------------EIG------------AFNGLANLN 128

  Fly   135 TILLSHNQIQRIEGNAFAGTSNIKLILLTNNPLIRIDSSAFSSLTNVGHLILP--SGIRSIEQDA 197
            |:.|..|::..|...||...|.:|.:.|.|||:..|.|.||:.:.::..|.|.  ..:..|.:.|
Zfish   129 TLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLSYISEGA 193

  Fly   198 FFGMDTVGLLKLAYMDLKEVAPFTFRGLSNVL-LLTLQE-----SDLGVICADAFTGLTQVETLQ 256
            |.|:..:..|.|...:|||:        .|:: |:.|.|     :.|.:|...:|.||..::.|.
Zfish   194 FEGLSNLRYLNLGMCNLKEI--------PNLIPLVRLDELEMSGNQLSIIRPGSFKGLVHLQKLW 250

  Fly   257 ILNNKIDSIEELNFTSTAAIKHLKFFGNHVLETPDPNSIIVDGVEHLQLVSNHFPCGCHIHTLLD 321
            :::.:|.:||...|....::..|....|::...|......:..:|.:.|..|.:.|.|.|..|  
Zfish   251 MMHAQIQTIERNAFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLHHNPWNCNCDILWL-- 313

  Fly   322 GPLAEGAHNLTDFLQKN-----YCISPLEVNGRVMSELD 355
                  :..|.:.:..|     .|.||....||.:.|||
Zfish   314 ------SWWLKEMVPANTSCCARCSSPTSHKGRYIGELD 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1504NP_001259742.1 leucine-rich repeat 61..84 CDD:275380 9/22 (41%)
LRR_5 73..200 CDD:404228 41/128 (32%)
leucine-rich repeat 85..108 CDD:275380 6/22 (27%)
leucine-rich repeat 109..132 CDD:275380 5/22 (23%)
leucine-rich repeat 133..156 CDD:275380 7/22 (32%)
leucine-rich repeat 157..180 CDD:275380 9/22 (41%)
leucine-rich repeat 181..203 CDD:275380 6/23 (26%)
leucine-rich repeat 204..227 CDD:275380 5/22 (23%)
leucine-rich repeat 228..251 CDD:275380 8/28 (29%)
leucine-rich repeat 252..275 CDD:275380 5/22 (23%)
lrrc4caNP_001018583.1 LRRNT 48..81 CDD:214470 10/33 (30%)
LRR <78..288 CDD:227223 67/241 (28%)
leucine-rich repeat 79..102 CDD:275380 9/22 (41%)
leucine-rich repeat 103..126 CDD:275380 11/46 (24%)
leucine-rich repeat 127..150 CDD:275380 7/22 (32%)
leucine-rich repeat 151..174 CDD:275380 9/22 (41%)
leucine-rich repeat 175..199 CDD:275380 6/23 (26%)
leucine-rich repeat 200..221 CDD:275380 7/28 (25%)
leucine-rich repeat 222..245 CDD:275380 7/22 (32%)
leucine-rich repeat 246..269 CDD:275380 5/22 (23%)
leucine-rich repeat 270..291 CDD:275380 3/20 (15%)
LRRCT 302..>340 CDD:214507 10/45 (22%)
IG 361..443 CDD:214652
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D180608at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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