DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1504 and Lgi2

DIOPT Version :10

Sequence 1:NP_608382.2 Gene:CG1504 / 33028 FlyBaseID:FBgn0031100 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_001100689.2 Gene:Lgi2 / 305417 RGDID:1310391 Length:542 Species:Rattus norvegicus


Alignment Length:316 Identity:70/316 - (22%)
Similarity:132/316 - (41%) Gaps:66/316 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IIALSVVVCLWNSQQTETSKSCPAECICLSQTQVLCNTGGLEQIPLRQLPATVENLALTKNNFPI 73
            ::.||....:..|.|......|||.|.|..:: ::|  .|...:| |.:|..:.:|:|....|..
  Rat    12 LLLLSAACLIPPSAQVRRLARCPATCSCTKES-IIC--VGSSWVP-RIVPGDISSLSLVNGTFLE 72

  Fly    74 IKPDSFAGLRALKKLSLDGNNITRIKQFAFRGLPRLKELSIQYTPLQMVAQFAFAGLQNLSTILL 138
            ||...|:.|.:|:.|.|:.|:.|.|:..||.||..|:.|.|:...::.:::.||.||::|:.:.|
  Rat    73 IKDRMFSHLPSLQLLLLNSNSFTVIRDDAFAGLFHLEYLFIEGNKIETISRNAFRGLRDLTHLSL 137

  Fly   139 SHNQIQRIEGNAFAGTSNIKLILLTNNPL------------IRIDSSAFSSLTNVG--------- 182
            ::|.|:.:..:.|:...::..:.|..|..            :::.:|..|.:..:|         
  Rat   138 ANNHIKALPRDVFSDLDSLIELDLRGNKFECDCKAKWLYLWLKMTNSTVSDVLCIGPPEYQEKKL 202

  Fly   183 -----------------HLILPSGIRSIEQDAFFGMDTVGLLKLAYMDLKEVAPFTFRGLSNVLL 230
                             |..||  .:|:..|.|...:.|      |:.:.:.:      :.|.::
  Rat   203 NDVTSFDYECTTTDFVVHQTLP--YQSVSVDTFNSKNDV------YVAIAQPS------MENCMV 253

  Fly   231 LTLQESDLGVICADAFTGLTQVETLQILNNKIDSIEELNFTSTAAIKHLKFFGNHV 286
            |.....::.....|..||.:.|....||      |::..|...|.:    |.|:|:
  Rat   254 LEWDHIEMNFRSYDNITGQSIVGCKAIL------IDDQVFVVVAQL----FGGSHI 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1504NP_608382.2 leucine-rich repeat 61..84 CDD:275380 7/22 (32%)
LRR_5 73..200 CDD:463839 37/164 (23%)
leucine-rich repeat 85..108 CDD:275380 10/22 (45%)
leucine-rich repeat 109..132 CDD:275380 7/22 (32%)
leucine-rich repeat 133..156 CDD:275380 5/22 (23%)
leucine-rich repeat 157..180 CDD:275380 4/34 (12%)
leucine-rich repeat 181..203 CDD:275380 7/47 (15%)
leucine-rich repeat 204..227 CDD:275380 2/22 (9%)
leucine-rich repeat 228..251 CDD:275380 4/22 (18%)
leucine-rich repeat 252..275 CDD:275380 5/22 (23%)
Lgi2NP_001100689.2 LRR_8 107..166 CDD:404697 14/58 (24%)
leucine-rich repeat 108..131 CDD:275378 7/22 (32%)
leucine-rich repeat 132..155 CDD:275378 5/22 (23%)
PCC 137..>212 CDD:188093 9/74 (12%)
leucine-rich repeat 156..168 CDD:275378 2/11 (18%)
EPTP 216..256 CDD:461033 10/53 (19%)
EPTP 263..302 CDD:461033 12/47 (26%)
EPTP 308..353 CDD:461033
EPTP 357..398 CDD:461033
EPTP 404..445 CDD:461033
EPTP 449..489 CDD:461033
Blue background indicates that the domain is not in the aligned region.

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