DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1504 and Cpn2

DIOPT Version :10

Sequence 1:NP_608382.2 Gene:CG1504 / 33028 FlyBaseID:FBgn0031100 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_001100555.2 Gene:Cpn2 / 303861 RGDID:1305170 Length:565 Species:Rattus norvegicus


Alignment Length:349 Identity:73/349 - (20%)
Similarity:144/349 - (41%) Gaps:64/349 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MCNSWLVLIIALSVVVCLWNSQQTETSKSCPAECICLSQTQVLCNTGGLEQIPLRQLPATVENLA 65
            :|  |..|::.:.|            ::.||..|.|..: ::.|:...|..||| .:|:.|.::.
  Rat    30 LC--WASLLLLVRV------------TQPCPVGCDCFDR-KIFCSDEQLAAIPL-DIPSHVTDIV 78

  Fly    66 LTKNNFPII------------------------KPDSFAGLRALKKLSLDGNNITRIKQFAFRGL 106
            ..:.:|..:                        :||:|.||..|:.|.:.|:..:.:....|..|
  Rat    79 FVETSFTTVGTRAFSGSPNLTKVVFLNTRVHHLEPDAFGGLPRLEDLEVTGSPFSNLSANIFSNL 143

  Fly   107 PRLKELSIQYTPLQMVAQFAFAGLQNLSTILLSHNQIQRIEGNAFAGTSNIKLILLTNNPLIRID 171
            ..|.:|::.:..|..:.:..|..:..|.::.|..||:|.:.|..|.....::.:.|..|.|.::.
  Rat   144 SSLGKLTLDFNRLAALPEDLFHHMDTLESLQLQGNQLQTLPGRLFQSLRYLRTLNLAQNLLTQLP 208

  Fly   172 SSAFSSLTNVGHL--------ILPSGIRSIEQDAFFGMDTVGLLKLAYMD---LKEVAPFTFRGL 225
            ...|.||:::..|        .||.|:          :..:|.|:..::|   :.|::|..|..|
  Rat   209 KGMFQSLSSLQILKLSDNMFARLPEGV----------LSNLGSLQELFLDSNAITELSPHLFSHL 263

  Fly   226 SNVLLLTLQESDLGVICADAFTGLTQVETLQILNNKIDSIEELNFTSTAAIKHLKFFGNHVLETP 290
            .::..|.||.:.:.::...||:.|..:..|.:.:|.:.::....||....:.||....|.:...|
  Rat   264 LSLEKLWLQHNAISLLPVSAFSSLRNLTFLNLKDNALRTLPAGLFTHNPGLLHLSLSYNQLETVP 328

  Fly   291 DPNSIIVDGVEHLQLVSN---HFP 311
            :.:...:..:..|.|..|   |.|
  Rat   329 EGSFANLRKLASLTLSHNAITHLP 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1504NP_608382.2 leucine-rich repeat 61..84 CDD:275380 7/46 (15%)
LRR_5 73..200 CDD:463839 31/158 (20%)
leucine-rich repeat 85..108 CDD:275380 5/22 (23%)
leucine-rich repeat 109..132 CDD:275380 4/22 (18%)
leucine-rich repeat 133..156 CDD:275380 7/22 (32%)
leucine-rich repeat 157..180 CDD:275380 6/22 (27%)
leucine-rich repeat 181..203 CDD:275380 4/29 (14%)
leucine-rich repeat 204..227 CDD:275380 7/25 (28%)
leucine-rich repeat 228..251 CDD:275380 6/22 (27%)
leucine-rich repeat 252..275 CDD:275380 4/22 (18%)
Cpn2NP_001100555.2 LRRNT 44..75 CDD:214470 10/32 (31%)
leucine-rich repeat 77..97 CDD:275380 1/19 (5%)
LRR 118..418 CDD:443914 54/245 (22%)
leucine-rich repeat 122..145 CDD:275380 5/22 (23%)
leucine-rich repeat 146..169 CDD:275380 4/22 (18%)
leucine-rich repeat 170..193 CDD:275380 7/22 (32%)
leucine-rich repeat 194..217 CDD:275380 6/22 (27%)
leucine-rich repeat 218..241 CDD:275380 4/32 (13%)
leucine-rich repeat 242..265 CDD:275380 6/22 (27%)
leucine-rich repeat 266..289 CDD:275380 6/22 (27%)
leucine-rich repeat 290..313 CDD:275380 4/22 (18%)
leucine-rich repeat 314..337 CDD:275380 4/22 (18%)
leucine-rich repeat 338..361 CDD:275380 5/15 (33%)
leucine-rich repeat 362..383 CDD:275380
leucine-rich repeat 386..405 CDD:275380
PCC 390..>499 CDD:188093
Blue background indicates that the domain is not in the aligned region.

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