DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1504 and Gp1ba

DIOPT Version :9

Sequence 1:NP_001259742.1 Gene:CG1504 / 33028 FlyBaseID:FBgn0031100 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_034456.2 Gene:Gp1ba / 14723 MGIID:1333744 Length:734 Species:Mus musculus


Alignment Length:218 Identity:50/218 - (22%)
Similarity:82/218 - (37%) Gaps:32/218 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LVLIIALSVVVCLWNSQQTETSKSCPAECICLSQTQVLCNTGGLEQIPLRQLPATVENLALTKNN 70
            :.|:|.|.::....:||.|     |....: .|..:|.|....|..:| ..|||....|.|.:|.
Mouse     1 MALLILLFLLPSPLHSQHT-----CSISKV-TSLLEVNCENKKLTALP-ADLPADTGILHLGENQ 58

  Fly    71 FPIIKPDSF----------------------AGLRALKKLSLDGNNITRIKQFAFRGLPRLKELS 113
            .......|.                      ..|..|:.|.|..||:..:....: .||.|..|.
Mouse    59 LGTFSTASLVHFTHLTYLYLDRCELTSLQTNGKLIKLENLDLSHNNLKSLPSLGW-ALPALTTLD 122

  Fly   114 IQYTPLQMVAQFAFAGLQNLSTILLSHNQIQRIEGNAFAGTSNIKLILLTNNPLIRIDSSAFSSL 178
            :.:..|..::.....||..|..:.|.:|.::.:.......|:.:|.:.|.||.|..:.|.....|
Mouse   123 VSFNKLGSLSPGVLDGLSQLQELYLQNNDLKSLPPGLLLPTTKLKKLNLANNKLRELPSGLLDGL 187

  Fly   179 TNVGHLILP-SGIRSIEQDAFFG 200
            .::..|.|. :.:|:|.: .|||
Mouse   188 EDLDTLYLQRNWLRTIPK-GFFG 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1504NP_001259742.1 leucine-rich repeat 61..84 CDD:275380 5/44 (11%)
LRR_5 73..200 CDD:404228 30/149 (20%)
leucine-rich repeat 85..108 CDD:275380 6/22 (27%)
leucine-rich repeat 109..132 CDD:275380 5/22 (23%)
leucine-rich repeat 133..156 CDD:275380 4/22 (18%)
leucine-rich repeat 157..180 CDD:275380 7/22 (32%)
leucine-rich repeat 181..203 CDD:275380 7/21 (33%)
leucine-rich repeat 204..227 CDD:275380
leucine-rich repeat 228..251 CDD:275380
leucine-rich repeat 252..275 CDD:275380
Gp1baNP_034456.2 LRR 28..>204 CDD:227223 38/177 (21%)
leucine-rich repeat 28..47 CDD:275380 5/19 (26%)
LRR 1 48..69 4/20 (20%)
leucine-rich repeat 51..72 CDD:275380 4/20 (20%)
LRR 2 72..93 0/20 (0%)
leucine-rich repeat 73..94 CDD:275380 1/20 (5%)
LRR 3 94..115 5/21 (24%)
leucine-rich repeat 95..117 CDD:275380 6/22 (27%)
LRR 4 117..140 4/22 (18%)
leucine-rich repeat 118..141 CDD:275380 5/22 (23%)
LRR 5 141..162 3/20 (15%)
leucine-rich repeat 142..165 CDD:275380 4/22 (18%)
LRR 6 165..188 6/22 (27%)
leucine-rich repeat 166..189 CDD:275380 7/22 (32%)
LRR 7 189..210 7/22 (32%)
leucine-rich repeat 190..211 CDD:275380 7/21 (33%)
LRRCT 221..281 CDD:214507
DUF5585 <257..539 CDD:375359
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 406..429
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 460..526
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D282791at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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