DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab10 and RAB8

DIOPT Version :9

Sequence 1:NP_523419.1 Gene:Rab10 / 33025 FlyBaseID:FBgn0015789 Length:204 Species:Drosophila melanogaster
Sequence 2:NP_001078278.1 Gene:RAB8 / 824529 AraportID:AT3G53610 Length:216 Species:Arabidopsis thaliana


Alignment Length:207 Identity:115/207 - (55%)
Similarity:159/207 - (76%) Gaps:5/207 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTA 66
            |:..||.|.||||||||||||:|:|.||||.:||::||:||||||||:|:||.||:|||||||||
plant     8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72

  Fly    67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMILGNKCDMTD-KR 130
            |||||.||||:||||||||:||||:|:|.||.||..|:|||::||::.|.|:::|||.||.: ||
plant    73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKADMDESKR 137

  Fly   131 VVNKERGEAIAREHGIRFMETSAKSNINIERAFCELAEAILDKTSGRESAENQERVIIDRRNQ-- 193
            .|.|.:|:|:|.|:|::|.|||||:|:|:|..|..:|:.|..:.:..::....:.:.|::.:|  
plant   138 AVPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEPQTIKINQSDQGA 202

  Fly   194 --EKAPGYSKCC 203
              .:|...|.||
plant   203 GTSQATQKSACC 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab10NP_523419.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 107/166 (64%)
RAB8NP_001078278.1 Rab8_Rab10_Rab13_like 13..180 CDD:206659 107/166 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 239 1.000 Domainoid score I589
eggNOG 1 0.900 - - E1_KOG0078
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 250 1.000 Inparanoid score I1031
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1426655at2759
OrthoFinder 1 1.000 - - FOG0000502
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X312
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.830

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