DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab10 and cracr2ab

DIOPT Version :9

Sequence 1:NP_523419.1 Gene:Rab10 / 33025 FlyBaseID:FBgn0015789 Length:204 Species:Drosophila melanogaster
Sequence 2:XP_009298523.1 Gene:cracr2ab / 564347 ZFINID:ZDB-GENE-041210-94 Length:773 Species:Danio rerio


Alignment Length:195 Identity:72/195 - (36%)
Similarity:112/195 - (57%) Gaps:9/195 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERFHT 73
            |||::|:|:|.||||.:|.||.|..|.|...:|:|||:.::|:.|....:.||:||||||||:.:
Zfish   586 LFKVILVGNSSVGKTALLRRFCDGQFHSATSATVGIDYSVRTLNLGDSHVALQLWDTAGQERYRS 650

  Fly    74 ITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMILGNKCDMTDKRVVNKERGE 138
            ||..::|.|.|::::||||.|.||.::..||.:|.|...:.:..|:||||.|..::|.|..:..:
Zfish   651 ITKQFFRKADGVVVIYDITMEDSFSSVRPWLSSIQEAVGDPIPVMLLGNKSDKENEREVQTKEAD 715

  Fly   139 AIAREHGIRFMETSAKSNINIERAFCELAEAILDKTSGRESAENQERVIIDRRNQEKAPGYSKCC 203
            .:|.|..:.|.|.||.:..|:..|...||..:         .|.::||.::.......|...|.|
Zfish   716 LLAEEANLMFYECSAYTGANVLEAMIHLARVL---------REQEDRVWVNTVRLGDQPLKKKTC 771

  Fly   204  203
            Zfish   772  771

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab10NP_523419.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 66/163 (40%)
cracr2abXP_009298523.1 EFh 46..106 CDD:238008
EF-hand_7 47..98 CDD:290234
FAM184 210..390 CDD:292293
RAB 587..745 CDD:197555 64/157 (41%)
Rab 587..745 CDD:206640 64/157 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0078
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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