DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab10 and rab35b

DIOPT Version :9

Sequence 1:NP_523419.1 Gene:Rab10 / 33025 FlyBaseID:FBgn0015789 Length:204 Species:Drosophila melanogaster
Sequence 2:NP_001003548.1 Gene:rab35b / 445154 ZFINID:ZDB-GENE-040801-62 Length:201 Species:Danio rerio


Alignment Length:202 Identity:95/202 - (47%)
Similarity:140/202 - (69%) Gaps:5/202 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQ 68
            :.||.|||||:||||||||:.:|.||:|:.|:.::|:|||:||||:||||.|:|:||||||||||
Zfish     3 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVELNGEKVKLQIWDTAGQ 67

  Fly    69 ERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMILGNKCDMTDKRVVN 133
            |||.|||::||||..|:::|||:|:.:||.|:.:||..|:::. :||.::::|||.|..:.:||.
Zfish    68 ERFRTITSTYYRGTHGVVVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPNSKVVE 131

  Fly   134 KERGEAIAREHGIRFMETSAKSNINIERAFCELAEAIL--DKTSGRESAENQERVIIDRRNQEKA 196
            ....:..|.:.||...|||||.|:|:|..|..:.|.:|  .|.|..:..:.|:..:|..:...|.
Zfish   132 TNDAQKFAEQMGISLFETSAKENVNVEEMFNCITELVLRAKKESVAKQQQQQQNDVIKLKQNSKR 196

  Fly   197 PGYSKCC 203
            .  .|||
Zfish   197 K--KKCC 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab10NP_523419.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 86/167 (51%)
rab35bNP_001003548.1 P-loop_NTPase 3..201 CDD:304359 93/200 (47%)
RAB 9..170 CDD:197555 83/161 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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