DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab10 and Rab18

DIOPT Version :9

Sequence 1:NP_523419.1 Gene:Rab10 / 33025 FlyBaseID:FBgn0015789 Length:204 Species:Drosophila melanogaster
Sequence 2:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster


Alignment Length:178 Identity:72/178 - (40%)
Similarity:112/178 - (62%) Gaps:6/178 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERF 71
            |...|||:||:|||||:.::.||.::.|......|||:|||.|.:::.|...|:.:|||||.|||
  Fly     3 DRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERF 67

  Fly    72 HTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHA-NEDVEKMILGNKCDMTDKRVVNKE 135
            .::|.|:||.|:|.:||||||:..|...:..||..:|.:: |.::..:::|||.|  ::|||::|
  Fly    68 RSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID--EERVVDRE 130

  Fly   136 RGEAIAREHGIRFMETSAKSNINIERAFCELAEAILDK---TSGRESA 180
            .|...||:|...|:|||||.:..:...|.::.|.|:..   .:|..||
  Fly   131 EGRKFARKHRALFIETSAKCDQFVSDVFKDVVEKIVSSEYFNNGNASA 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab10NP_523419.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 69/166 (42%)
Rab18NP_524744.2 RAB 6..166 CDD:197555 67/161 (42%)
Rab18 6..165 CDD:206656 67/160 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454344
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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