DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab10 and Rab35

DIOPT Version :9

Sequence 1:NP_523419.1 Gene:Rab10 / 33025 FlyBaseID:FBgn0015789 Length:204 Species:Drosophila melanogaster
Sequence 2:NP_001013064.1 Gene:Rab35 / 288700 RGDID:1306362 Length:201 Species:Rattus norvegicus


Alignment Length:204 Identity:92/204 - (45%)
Similarity:144/204 - (70%) Gaps:9/204 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQ 68
            :.||.|||||:||||||||:.:|.||:|:.|:.::|:|||:||||:|||:.|:|:||||||||||
  Rat     3 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 67

  Fly    69 ERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMILGNKCDMTDKRVVN 133
            |||.|||::||||..|:::|||:|:.:||.|:.:||..|:::. :||.::::|||.|..:::||.
  Rat    68 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVE 131

  Fly   134 KERGEAIAREHGIRFMETSAKSNINIERAFCELAEAIL----DKTSGRESAENQERVIIDRRNQE 194
            .|.....|.:.||:..|||||.|:|:|..|..:.|.:|    |..:.::..:..:.|.:.:.::.
  Rat   132 TEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKR 196

  Fly   195 KAPGYSKCC 203
            |    .:||
  Rat   197 K----KRCC 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab10NP_523419.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 86/169 (51%)
Rab35NP_001013064.1 Rab35 3..201 CDD:133310 90/202 (45%)
Effector region. /evidence=ECO:0000250 37..45 4/7 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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